Ciona intestinalis (yellow sea squirt): 100177392
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Entry
100177392 CDS
T01056
Name
(RefSeq) chondroitin sulfate synthase 1
KO
K13499
chondroitin sulfate synthase [EC:
2.4.1.175
2.4.1.226
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
cin01100
Metabolic pathways
Module
cin_M00058
Glycosaminoglycan biosynthesis, chondroitin sulfate backbone
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
100177392
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
cin01003
]
100177392
Enzymes [BR:
cin01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.175 glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase
100177392
2.4.1.226 N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase
100177392
Glycosyltransferases [BR:
cin01003
]
Glycan extension
O-Glycan
100177392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CHGN
Fringe
Glyco_transf_7C
Glyco_tranf_2_2
DUF7164
Galactosyl_T
Motif
Other DBs
NCBI-GeneID:
100177392
NCBI-ProteinID:
XP_002129676
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All DBs
Position
4:507158..513843
Genome browser
AA seq
1086 aa
AA seq
DB search
MIPLRVSDIRMGSHRRLVSRRALIGLGIGILLGFNIASYIAIPTPNRTDIEIAVIARNGA
EGLEGMAGGLTEFRVGAARIRRQKGVGSLHIGKGCKHEVIAYESADVKPLSQKRMQRRNE
RMQANQNSKSLKEGGALPDGFDLEQERLKRQKELEVFYESDIENDDGDAKNGGGFEEFQL
PRNFEKYVDYESDVNAQNSDSIDGEHNGDVRDSDQMLADEVHRKLHKPLTDRNHFLYIGV
LTAQKYLATRGRAIHHTWEPHVPGKVEFYVGEGVEEINAEKKDPLPLVNLQSVQDDVYPP
QKKSFLLLKRMYDSYLNSGYQWFMRADDDVYINTHKLELFLRRLNSSEPIYLGQTGLGNA
EERGRLSLLHGENYCMGGPGMIFSREVLRRIGPHIRECVHHLYSWHEDVEISRCVRKFAG
VNCAWSYQMQELFYEHYTLRKGYIDPYEEPNNPKFRTAMTLHPNKNPAYQVKLHQFMRSQ
RLKQRMMDIKRLSRDVVNMDGYLGSGSDIEDFMLGSPLTLNRFMPRQHSEVLHWNFITDH
LLYSTPPHQPRRSTPNDWQMTIRSIVMQVMAMMNSNSRVRGRVIDFKQVGYGYRRVNPLY
GAEYVLDLLLIYKRYKGKKMTIPVRRHAYLQQSFGRTDMYENSPIDKDEIKRILRGSSAN
MLLSFMNSLVNKSKTILSVMGLAGGRSPVAESSKPIDIDKESIQRKESKVQYDTGSFRVF
PQDAKSQANVETVNIIVPLSGRYDTFRSFMSNLENVSLSRGDPISLMAVVFIGVDSEYKE
EGIKTRDLLDSYSKRYPLYDMRQIPINAKFSRGLALEIGASHFSNDSLLFFCDVDVVFDN
EFTRKCRSNTDLGKRVFYPVLFSEFHPRFNGADTSWKFTSDDIDARNVVKPRENHYELTE
NTGHWRSYGYGLLCVYQKDFTETGGFDMTIQGWGLEDVDLIDKFLGSKHKKKADALTKDE
AAAKTKNMEIMRVSEPSLVHVYHPSHCDPNLMENQLRMCQASRASGITSTYNLNRMWQLL
GLNRTASAVADPVSGIVPVLPHDVAKEQLRERGIENFSDRRERALEIERRTLKLKQNRKF
NRNGIR
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgattccattacgtgtgtcagacattagaatgggcagccaccgacgattggtgagcaga
agagctttaattggactcggtattggaattctgttaggttttaacatcgcatcgtacatc
gcgataccgacgccaaacaggactgatatcgaaattgctgtaatagctcgtaatggagcg
gaagggctggaaggaatggctggtggactgactgagtttcgcgttggtgcagctagaata
cgaaggcaaaagggtgtgggttcgttacatataggaaagggatgcaaacatgaagtaatt
gcgtatgaatctgctgatgttaaaccactttcacaaaaacgtatgcaaagaagaaacgaa
agaatgcaagcaaatcaaaatagtaaaagtttaaaagaaggaggcgcattacccgatggt
ttcgatttagaacaagagagactgaaacgccaaaaagaattagaagttttttatgaaagt
gacatcgaaaacgatgatggggatgcgaagaatggtggaggattcgaagagtttcaactt
ccgcggaactttgagaaatacgtagattacgaaagtgacgtcaacgcccagaatagcgat
tcaattgatggcgaacataatggggacgttcgtgacagtgatcaaatgctcgctgatgag
gtgcatcgaaaattgcataaaccgttaacagaccggaatcactttttatacatcggcgtc
cttacggcacagaagtatcttgcgactagaggtcgcgctatccaccacacttgggaacct
cacgtccctggaaaggttgagttctacgttggcgaaggcgtagaggaaattaatgctgaa
aagaaagaccctctacccttagtcaatctacagtctgttcaagatgacgtttacccgcca
caaaagaagtcattcttactgctgaagcgaatgtacgactcctaccttaactctggatat
cagtggttcatgcgtgctgatgatgatgtgtatatcaacacgcataaacttgagttattt
cttcgccgattgaacagttccgagccgatatatcttggacagactggtctcgggaatgct
gaggaaaggggacgattgagtttactgcacggagagaactactgtatgggtggacctggt
atgatattcagtcgtgaagtcctccgtaggataggtcctcacatccgggagtgcgtacac
catctttattcgtggcatgaagatgtggaaatcagtcgctgtgttcggaagttcgccggg
gtgaattgtgcctggtcgtatcagatgcaggaattgttctatgagcattatacacttcgc
aaaggatacattgacccctacgaggaaccaaacaacccgaaatttcgaaccgcaatgacg
cttcaccctaacaaaaatcccgcctaccaagtcaaactacatcaattcatgcgctcacag
cgtctcaaacaacgtatgatggatattaaacgactatcaagggacgtagttaacatggat
ggataccttggtagtggttcggatattgaagactttatgttgggatcccccctcacatta
aaccgttttatgccacgtcaacattcagaggttttacattggaatttcatcactgaccac
ttactttattccacgccaccccaccaacccagacgctcaactccaaacgattggcaaatg
actataaggagcatagtaatgcaggtaatggcaatgatgaattctaattctcgtgtccgt
ggtcgagtgattgacttcaaacaagttggttatggataccgcagagttaaccccctctat
ggagctgaatatgtgcttgatctcctgcttatctataagcggtataaaggcaagaaaatg
accatccctgtacgtcgtcatgcttatcttcaacaaagctttggccgtacggacatgtat
gagaacagccctatcgataaagatgaaattaaacgcattttgagaggctcaagtgcgaac
atgcttctctccttcatgaactctttggtaaacaaatctaaaactattttatcagttatg
ggacttgctggtggaaggagtccggtcgcagaatcgagcaaaccgattgacattgataaa
gagtcaatacaacgtaaagaatcgaaagtccagtatgataccggttcctttagagtattt
ccacaagatgcaaaaagtcaagcaaatgtggagactgttaatataatagttccgttatct
ggacgatacgacacatttcgttcttttatgtcaaacttggagaatgtcagtttatcaaga
ggcgacccaattagtctcatggccgttgtgtttatcggcgtggattcggaatataaagaa
gaagggataaaaacacgtgatttgctggacagctattcaaagcgttacccactatacgac
atgcgacaaataccaataaacgccaagttttcaagaggactggcgcttgaaatcggagct
tcgcatttctcaaacgactcattgttattcttttgtgacgtagacgttgtgttcgacaac
gagtttactaggaaatgcagatcaaacacagatttgggaaaaagagttttttatcccgtg
ttgttcagtgagttccatccccgttttaacggagctgatacgtcatggaaatttacctcg
gatgatatagacgcacggaacgtagtaaaaccacgtgaaaatcactacgagttaacggaa
aacactggccactggagaagttatgggtatggtttgctctgtgtgtatcagaaggatttt
acggaaaccggtggcttcgacatgaccatacaagggtggggtcttgaagatgtggatttg
attgacaaatttcttggctcgaaacacaaaaagaaagcggacgcattgactaaagatgaa
gcagctgccaagacaaagaatatggagattatgcgtgtttcagaaccgtcgttggttcat
gtttatcatccttctcactgcgatccaaatttgatggagaatcagttacgtatgtgtcaa
gcatccagggcatctggtattacatctacttataatttaaacagaatgtggcaactgctt
ggtttgaatagaaccgcttctgctgtggccgatcctgtcagtgggatagttcctgtgcta
ccgcatgatgtcgcgaaagagcaactaagagagagagggattgagaacttttccgataga
cgggagagggcgctagagatcgaaagaagaacgttgaaattgaaacagaatagaaaattt
aatcgaaacgggatacgctga
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