Ciona intestinalis (yellow sea squirt): 100177431
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Entry
100177431 CDS
T01056
Name
(RefSeq) RAB6A-GEF complex partner protein 1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100177431
Membrane trafficking [BR:
cin04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
100177431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIC1
Motif
Other DBs
NCBI-GeneID:
100177431
NCBI-ProteinID:
XP_018671148
LinkDB
All DBs
Position
Unknown
AA seq
1728 aa
AA seq
DB search
MYFPVSWPKYLSVGQGGKSRLKIIACNRYRMLFAVLTETTLSIWHCKPCVEIVCYQRCHS
SVASVGTNELAEWRQDSSMIAITTSEGYVLLYQLEQDVRGDDGLHLYEYQQTKTNQGDSN
EVVPALRLSLKANFSYKAKITSLTCIHDELLVALEDGRLEMITWEPTSDVQKSIHLCEIP
FSVDLHVTGSQLKSRGVHAVDIVYSPFLEGFAVILSDGRAALVTMTQPDDSTKDSLPLGW
NARGVWAPMIDQATCIAVNNKYRLLAFGTEMGTCCVYGIDNVTGCLQLSHTVALSPTHYP
NICKSVGSVLKIDWSPDGSAMSLAWSRGGLSVWSVFGACLVCSLASDRAYATDGTPHVQG
IFKSMCWGVEGYHLWLISEQPAPPLEVSNGHVEEKKKSARRKLVDDDDDHNYIELGQLLQ
LQFVKSALAMNPCMTNHCHVLIHGEDRMYLSIGERSQRTTVYSPPKTPASPIKKPAFSPT
RTTKQNSPRRRSTPASHTAAHFDLSRLPTISMNGKMAQEDEQPHDDGDGEDGFLGSAVSN
KQWTVVQFPINYLPSNWPIRFTAVDESGCCLAIAGNYGLAHYTIVSRKWKVFGNVMQEKD
MVVTGGLTWWKEFIVVACYSFSESQDEIRIYPRLTNLDNAFACVKKIKSQILLVNIFQDL
LILFTYDCRIIIFVISQDTKLHRPTANLRYLQEVSMARYVHYPTMVASVTLTALHMESPM
RRSSSSSSFSSRGNRETEVLIVNVAGRLLLLQRSLEDDEIIEAEPNERKPMRFNPPVVLA
TCVENIWTTEHKKSEKIHLTDALWLGCGSAGVRVWLPLFPPRQSRHNSAECGPHRGFELQ
LLTARRITLTFALDSCYPLAVLFSEAVLLGVTSETFQYSSYEEKKPSKRSRQKTNFAFST
VERTCEIYLHQILRQLLRRNLGYDALQLAATCKNLACFPHVLELMLHEVLEEEATASEPI
PDPLLPTVVKFLEEFPEYLQTVVHCARKTEIALWEYLFNSVGSPRELFEECLETGQLTTA
ASYLIILQNLEQLAVARQDATKLFDQALQQRMWRLANDIARFLRAIGDGDASATPRHPTL
LNTNIYPAVAPTIHTTPTEADPSFKFSSKPSSPTCPEEPTPPHPRRLTTRSFTESYFDIK
PSPSSVTSPGNTNTSVTSSSHHPYIPRYGTRQYHQDHPHIHRPLQHSISHPLSSSSNRSK
RFSGDKEPSSKEHAAAECAEHYFIDVILARQARKMLSERRLHDLGTFAAHVDFQLVPWLR
KERLRAARVDDAVESFKKLHEDFNWPFPNLVASKSGRSSHSSGGFPSHSQSFTDLNSLYS
PLESAISPSKSFNHNHSSPGRRHTTGPKLAHHVGLSPKRGIPGLDTCSYGTDEEGSGITT
VLSAKETGSTLTLTTVASEVSEVSESSFGFDDSTFAGVEDFTGFPLIGIEMDEKRGSARC
EMKLQYLLELFLEAVCLEWAVLVTLMLRDPSNLSRVVRSARPPEGAMEESVPLETLQRTR
DCLSNIDKWAVSECPGYKAVLIQMRSNVQALYDIITAREVSHAEEQAIIANQQKSHTQAT
TSPVNQNQEKTEKHTSPVTSPHNRSPVTIKKRRAVVPGIAIASVNHGDVITEEAEVTSQS
DDYETNSESQESHVIITPRIRHNSVPCHNSDDCIVTSHCRTPSSPAKLIAQTSPACLDSS
DEGTINVETPQPDTETAPSTDQSQSDTFTDDVTDSEPEVEDTSACLVS
NT seq
5187 nt
NT seq
+upstream
nt +downstream
nt
atgtattttcctgtatcgtggccaaaatacttgtcagttggccaaggaggcaagtcaagg
ttaaagatcatcgcgtgcaatcgttatcgaatgctatttgctgtcttgacggaaactact
ttaagcatatggcattgcaagccttgtgttgagattgtatgttaccaacgttgtcattca
tctgttgcatcagttggaaccaatgaactcgcagaatggagacaagacagcagcatgatt
gcaataacaacctctgaaggttacgttctactttaccaacttgaacaagatgttcgtgga
gatgacggacttcacttgtacgaatatcaacaaaccaaaaccaaccagggcgactccaat
gaagtggttccagcattaaggttgtcgctgaaagcaaacttcagttataaagctaagatt
acaagtttgacatgcatccatgatgaactacttgttgcattggaagatgggaggcttgag
atgataacatgggagccaacaagcgatgtacagaagtcgatacatctatgtgagattcct
ttctctgttgatctccatgtaacaggttcccagttaaagagtcgaggagttcatgcagta
gatattgtgtacagtcctttcctcgagggctttgctgttattttaagtgatggccgagca
gcattagtaaccatgacacaacctgatgattcaaccaaagactctttaccgctcggttgg
aatgctaggggagtttgggccccaatgatcgaccaagctacttgtattgctgtgaacaat
aagtacagactgctcgcattcgggaccgaaatggggacatgttgtgtctatggcatcgac
aatgttactgggtgtctacaactctcacacacggtggcgctatcaccaacacattacccc
aacatatgcaaatcagttggttcagtgttaaagatagattggtcaccagatggttcagcc
atgtccttagcctggtcacgaggtggtttatcagtctggagtgtatttggtgcatgtctt
gtgtgttctcttgcatcagatcgtgcgtatgctactgatggaactccccatgtgcaaggg
atatttaaatcaatgtgttggggtgttgaaggttaccacctgtggttgatcagcgagcaa
ccagcgccaccactggaggtcagtaacgggcatgtggaggagaaaaagaagtcagcgcga
cgcaaactagtcgatgatgacgatgaccataattatatagagttagggcaactgcttcaa
ctccagttcgttaaaagtgctctagccatgaatccctgcatgacaaaccattgccatgtc
ctaatacacggtgaggaccgaatgtacctcagtatcggtgaaagatcccaacgtacaaca
gtatacagcccacctaagacacctgcctctcctatcaagaaaccagcattctcaccaaca
aggacaactaaacaaaattcacctagaagaagatcaacccctgcaagccacaccgctgcc
cattttgacctcagtcgtctcccaacaatatcaatgaatgggaagatggcacaagaagat
gaacaaccacatgatgatggggacggggaagatggatttcttggttctgctgtaagcaac
aagcaatggacggtcgtgcaattcccaatcaactatctgccaagcaactggcctataagg
tttacagcagtagatgagtcaggttgctgtctagcaatcgccggcaactacggactcgct
cattacaccattgtgtcgaggaaatggaaagtattcgggaatgttatgcaagagaaagat
atggttgttactggtggtttaacttggtggaaagagttcattgtggttgcgtgttacagt
ttctcggaaagccaagatgaaatacggatctatcctcgcttaaccaacttagataatgcg
tttgcttgcgttaagaagattaaatcacagatattgcttgtcaacatatttcaagacctt
cttattcttttcacttacgattgtcgcatcataatatttgttatttcgcaagatactaaa
cttcatcgcccaacagccaatttacgataccttcaagaagtatcaatggcacgttacgtc
cactaccctaccatggtggcttcggttacattaacagctctccacatggagagtccgatg
agaagatcgtcttcttcctcgtcgttttcgtcgcggggaaacagggagacagaggtcctt
atagttaacgtggcaggtcgtcttctgctcctccaacgttcattggaagatgatgaaatc
attgaagcggaaccaaacgaacgtaaaccaatgagattcaaccccccggttgtcctggca
acttgcgtcgagaatatctggacaactgagcacaagaaaagtgaaaagatccacttaacg
gatgcgttatggcttggttgcggaagtgctggtgtgagagtatggttgcctctcttccct
ccccgacaaagtcgtcacaacagcgctgaatgcggcccccatcgagggtttgaactgcag
ttgctaacagcgagaagaataactctcacgttcgcgttggactcatgctacccactagct
gtgctgttcagtgaggctgttttactgggagtaacctctgagacattccaatactcaagt
tacgaggagaaaaaaccttcgaaaagatctcgacagaaaacgaactttgcgttctcgacg
gtcgaacgaacgtgtgaaatatatttgcaccagatactacgtcaactcctgcgtcgcaac
cttggatatgatgcgctgcaattagcagcaacttgtaagaatcttgcttgttttcctcat
gttctggagcttatgttgcatgaggtccttgaggaggaagccacggcctcggagccaata
cccgaccctctgctgcctacagtggtcaaatttctagaagaatttccagaatatttacaa
actgtcgtacattgtgcaaggaagaccgaaattgccttgtgggaatatttatttaactct
gttggaagcccgcgcgaattatttgaggaatgtttggaaaccggtcagttgacgaccgca
gcctcttacctcattattctacaaaaccttgaacaattggccgtcgcacgacaagatgca
acaaagttgttcgatcaagcgttgcagcaacgaatgtggagattggccaatgatatcgct
cggtttttaagagccatcggtgatggagatgcgagcgcgaccccccgtcaccccacatta
cttaacaccaatatttaccctgctgtagccccaacaatacacaccacgcccaccgaggcc
gacccttcgttcaaattcagttctaagccatcgagccccacatgcccagaagagcccacc
ccccctcacccacgtcggctcactacgaggagttttactgagtcatactttgacatcaag
ccttccccttcctctgtgacatcaccgggtaacacaaacacctctgtgacatcatcatcg
catcatccatacataccaaggtatgggacgcgacaatatcatcaggaccacccccatata
caccgccccctgcagcattctatcagccatcctttatctagtagtagtaatcgatcaaaa
agattttccggtgacaaggaaccaagtagtaaagaacacgcagcagccgaatgcgcagaa
cattattttattgatgtcattctcgctagacaggcacgaaaaatgctgagtgagcgcaga
ctgcatgacctcggcacttttgcggctcacgtcgatttccaactcgtgccgtggcttcga
aaagaaaggttaagagccgcaagagtggacgatgctgttgaatcgttcaagaaacttcat
gaagattttaactggcccttcccaaatttggttgcttctaaatcaggcagaagtagccac
agttctggtggcttcccgtctcactcccaatcatttactgatcttaactcattatactcg
ccactagagagcgctatatcaccttccaagtcattcaaccataaccattcatctccgggt
cgacgacacacaactggtcctaaacttgcccatcatgttggcttgtcacccaagagggga
atccccggattagatacttgtagttacggcacagacgaggagggaagtgggatcactact
gtgttatcagctaaagaaactggctctactttaactctaactactgtggcgtcagaagtt
tcagaggtttctgaatcaagttttgggtttgatgattcaacttttgcgggcgtggaagat
ttcacgggattccccttaattgggatcgaaatggatgaaaaacgaggatcagcgcgatgc
gagatgaaactacaatacttgttggaattattcctcgaagctgtgtgtttggagtgggcg
gtgctggtgaccttgatgttgcgcgatccatccaacctttcgagggtggtgaggtcagcg
aggccaccagagggagctatggaggagtcggtcccacttgaaacgcttcagcgaacacgg
gattgtctttcaaacatcgataaatgggctgtgtcagaatgccctggttataaagctgtt
ctcattcaaatgcggagcaatgtacaagcactttatgacatcataactgcaagggaagtt
tcccacgctgaggaacaagccatcattgctaaccaacaaaagagccacacccaagcaaca
acgtcacctgtcaatcaaaaccaggagaaaacggagaaacacacgagtcctgtgacgtca
ccacataatcgctcacctgtgacgattaaaaagagaagggcggtagtccccggtatcgcc
atcgcttccgtgaaccatggtgacgtcatcacagaagaagcggaagtgacgtcacaatcc
gatgattacgaaacaaacagcgaatcccaagaatcccacgtcataataactccacgtata
cgtcacaatagcgtaccgtgtcataacagcgacgactgcattgtgacgtcacactgcaga
acgccgtcgtctccagcgaagttgatcgcgcaaacgtcacccgcgtgtttggactcttca
gatgaaggaacgataaacgtagaaacccctcaacccgacaccgaaacagcgccatctacc
gaccaatcgcaatccgacactttcacagatgacgtcacggactcggaaccggaagtcgag
gacacctccgcttgcttggtttcgtaa
DBGET
integrated database retrieval system
