Ciona intestinalis (yellow sea squirt): 100177504
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Entry
100177504 CDS
T01056
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100177504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100177504
03036 Chromosome and associated proteins [BR:
cin03036
]
100177504
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100177504
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
100177504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup98_GLEBS
Nucleoporin_FG
Rrf2
Motif
Other DBs
NCBI-GeneID:
100177504
NCBI-ProteinID:
XP_009859228
LinkDB
All DBs
Position
Unknown
AA seq
514 aa
AA seq
DB search
MIIMFNQQKGGFGSGFGNSSGGLFGNKTTTSSGLFGNTSSAFGTGATSSGFSFGGNAANT
SGMFGTPASKPTGGLFSTPASTQGFGASSGFGAVFGQARTTSSTPFGTTTTSTFGGGVFG
GNTFTQQQSGTTVKFTPTTGSDTMVKSGVQSNITTKHQCITAMKEYEMKSMEELRVEDYL
EGRKGPGTGTTLTKPASGGFNFGQQPSTSGSMFGSTAKPAFGTSSGGLFGTASTSTTGGL
FQQSKPFQTTSAASGFSFGAATTTSSSLFGNTAKPAGSMFGNTAGGLFGSNTSGNTGFGA
PLFGNKTSGFGTTVTSSGFGGGLFGQPTATKPSSDLFSSSGGFGQNAGSTLFGGNKTGFG
AKTTNTGSLFGNTALNTGNTGNKFGGFGNTGGGFGGFNFSAGANTGSTGGGFGVTTNAGT
MFGQQSTTGGAVSLVPSTNQQSVEMLQALLTAPFGDSPLFKNALSDPVKKKELLKPTNPI
AQQAALQSPMYRVSPNPATKIKPKARXGVTRGSN
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgattattatgtttaatcaacaaaagggtggatttggcagcggtttcggtaacagtagt
gggggtttgttcgggaacaaaacaacgacatctagtggtttgttcggcaacacttcgagc
gcgttcggaaccggagcaacttcaagtggtttttcgttcggtggaaatgcggccaacaca
tcaggtatgttcggcacgcccgcctctaaaccaactgggggtctgttttccaccccggcc
tcgacgcaggggtttggcgcctccagtggattcggagctgtgttcggtcaagcacgaaca
acaagttcgaccccgtttggcacgactacaacgtcgacgttcggtgggggtgtgtttggg
ggaaatactttcacacaacaacaaagtggaaccacagtaaagtttacaccaacaactggt
tcggataccatggtgaaaagtggtgttcaatcgaatataacgaccaaacaccaatgtatt
acggccatgaaggaatatgagatgaaaagtatggaagaactgagggtggaagattatttg
gagggaaggaagggaccaggcacaggaacaacactcacgaagcctgcctccggtggattt
aactttggtcaacaaccatcgacgtcgggaagcatgtttggttcaactgctaagccagcg
tttggcacctctagtggtgggttatttggaacagcgagcacatcaacaacaggtggtttg
tttcaacaatcaaaacctttccaaactaccagtgctgccagtgggtttagtttcggtgca
gcaacaactacgtcatcatcactgttcggcaacactgctaaaccggctggaagcatgttc
ggcaacactgctggaggattgttcggatcaaatacatcgggaaacactgggtttggtgct
ccgttgtttggcaacaagacgagtgggtttggtacaacagtgacatctagtggatttgga
ggtggattgttcggacaaccaacggcaacgaaaccttcgagtgatttattttcatcgtcg
ggggggttcggacaaaatgcaggttccacgttgttcggaggcaacaagacggggtttggg
gcgaaaacaactaacaccggtagtttattcggcaacactgctttaaacactggtaacact
gggaataaatttggtgggttcggcaacactgggggtgggtttggggggtttaacttctca
gcgggggccaacacgggtagtacaggcggtgggttcggggtgacaactaacgctggtacg
atgttcggacaacaatctaccaccgggggtgctgtttcattagttccgtcgaccaatcag
caatctgtggagatgttacaggcattgttgacagcaccattcggggattcccccttgttc
aagaatgcgttaagtgatccagtgaagaaaaaagagcttttgaaaccgacgaaccccata
gcccaacaagcagcgttacaatcacccatgtatcgagtttcgcccaacccggctaccaag
atcaagcctaaagcacgancaggggtcactcgggggtcaaactaa
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