Ciona intestinalis (yellow sea squirt): 100177545
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Entry
100177545 CDS
T01056
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100177545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100177545
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
100177545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
NRDE-2
Cullin_binding
Motif
Other DBs
NCBI-GeneID:
100177545
NCBI-ProteinID:
XP_002126480
Ensembl:
ENSCING00000006401
LinkDB
All DBs
Position
2:complement(4666887..4674340)
Genome browser
AA seq
718 aa
AA seq
DB search
MPKDKSNSEYMPERIRKLETRVGENEFDVEAWNGLIREAQTQPIDKGRTTFERLISQFPT
TGRYWRIYIEQEMKSRNYEKVEKLFQRCLMRVLSIDLWKCYLTYVRETKSGLSSYREKMA
QAYDFALEKIGMDIMSYQIWADYIAFLKAVEAVGSYAENQRITAVRRVYQRGCVNPMINI
EQLWREYSQYEQGINPIIAKKMLDDRTREYVNARRVSKELEATTRSLQRHNPATPPCGSV
EEAKQVLVWKKYIDWEKSNPLRSESLTVISKRVMFAYEQCLLCLGHHPDVWYEAAQYLSS
TSKLMQEKGDTNSSKILSDEASSLYERAISSLMKSNTLIHFAYADFEEGRMKHDKVHTIY
QRLLDIKDCDQTLTYIQYMKFTRRAEGIKAARLVFKKAREDTRIRFHVFVAAALMEYYCT
KDKQIAFKIFELGLKRFGHEPDYLLAYIDYMSHLNEDNNTRVLFERVLTSTSLSPDKSGT
IWDKYLEFECNVGDLSSLLKVENRRLEAFKADYEGKSTCMLIDRYRFLDLYPCAPEILRA
LGYKDTRTPNKTTTTMMNPTSSSMDAGAKSSMDDAGKKKVGFAMPDLSQMIPYKPRRRPL
PGSHPVPGGDFPFPGAATILLKNMPPPRSFHGPFVKVDDLMDKFADCSLPSEEDWLKQVN
SGGEGHTFSVSGATSGVRYAGVKRSSSRGDSDDEMSASRSAAPPAHDIYRARQQKRVK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggataaatcgaattcggaatacatgcctgaaaggatcaggaaacttgaaact
cgtgttggagaaaatgagtttgatgttgaagcttggaatggtttgatacgtgaggctcag
acccagcctattgataagggcagaacaacttttgaacgtttaatttcacaatttccaaca
actggcagatattggcgaatttatatagagcaagagatgaagtctcggaactacgaaaaa
gttgaaaagcttttccagcgttgtctgatgagagttttgagtattgatttgtggaaatgt
tacttgacctatgttagagaaaccaaaagcggcctttcttcataccgtgaaaaaatggcg
caagcatatgattttgctctcgagaaaatcggaatggatattatgtcatatcagatctgg
gcagattacattgcgtttctcaaagctgttgaggctgtcggttcctatgctgaaaatcaa
cgaattacagcagttcgacgagtttatcaacgcggatgtgttaacccaatgataaacatt
gaacaactgtggagagaatattcacaatatgaacagggcattaatccaataattgcaaag
aaaatgttggatgatcgaacacgtgaatatgtcaatgcacgccgggtttcaaaggaatta
gaagccacgacgcgtagtttgcagcgtcacaacccagcaacccctccctgtggttcagta
gaagaagcaaaacaggttttggtttggaaaaaatacattgattgggagaagtcaaatcct
ttgagatctgaaagtttaactgttatttcaaagagagtaatgtttgcttatgagcaatgc
ttgctatgtcttggccaccaccctgatgtttggtatgaagctgcacagtatttgtcaagt
acaagcaaacttatgcaagaaaaaggagacaccaatagcagcaaaatcttatcggatgaa
gcttcttcactttatgagcgagctatatcgagtttaatgaagtcaaatactctcattcac
tttgcatatgctgattttgaagagggtagaatgaaacacgacaaagtacacacaatttat
cagagattacttgacatcaaagattgtgatcaaactttgacatacatacagtacatgaaa
ttcacaagacgtgctgaaggcattaaagctgctaggttggtgtttaaaaaagcaagggag
gatacaagaattcgattccatgtatttgtagctgctgctttgatggaatattattgtact
aaggacaagcaaattgctttcaaaatatttgagcttgggttaaagcgctttggtcatgaa
cctgattacctgcttgcatatattgactacatgtcacatctcaatgaggacaacaacaca
cgggttttgtttgaaagggttctgacgtcaactagtttatcaccagacaaatctgggact
atctgggataagtacttggagttcgaatgtaatgttggggatttatcttcattgctgaag
gtagaaaacaggagactggaagctttcaaagctgattatgaaggaaaatcaacctgcatg
ctgattgacagataccgtttcttagatttgtatccttgtgctcctgaaatattacgtgct
ctcggatataaagacacaagaactccaaataagacaacgaccacgatgatgaatccaaca
tcctcatccatggatgcaggagctaaatcttccatggatgatgctgggaagaagaaagtg
ggattcgcgatgccggatttatcacaaatgattccttataagccaagacgtcgaccactt
ccaggctcacaccctgtgccaggaggagattttccgtttccaggagcagcaacaatattg
ttaaagaacatgccgcctccaaggtccttccatggtccctttgtcaaagttgatgatttg
atggacaagtttgctgactgctcattaccaagcgaggaggattggttaaaacaagtgaac
agtggaggagagggacacacgttctcagtgtcgggagcaacgagtggagttcggtatgcc
ggagtcaaacgttcatcttcaagaggagattcagatgatgaaatgtctgcatccagatct
gctgctcctccagctcatgatatttacagagctcgtcagcagaagcgagtgaagtga
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