Ciona intestinalis (yellow sea squirt): 100177581
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Entry
100177581 CDS
T01056
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100177581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100177581
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100177581
Spliceosome [BR:
cin03041
]
Complex C
Other components
Step II factors
100177581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
S1
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
GIPC1_GH2
ABC_tran
ResIII
PhoH
TsaE
Cas3-like_C_2
T2SSE
AAA_30
AAA_16
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
100177581
NCBI-ProteinID:
XP_009860657
Ensembl:
ENSCING00000001546
UniProt:
F6YKR9
LinkDB
All DBs
Position
13:1664137..1672452
Genome browser
AA seq
1185 aa
AA seq
DB search
MDELEKLEYLSLVSKVCTELDNHLGMNDKDLAEFIISIADKHPSLPKFSKVLKKKGAEFP
ETFTKNLLSLIQRMRPPKKKKGKEGEEILVETDDGRGKYKLMFPALCRADDAPVLPEPPK
ITEVDTKDAEDTMNELENLLAPREERKKGRGGSPHRSRDRERESSTRRSRHDRDDSRSRR
DRSRSPHSKRSRDDRRRDGRDHSRSRRRSPSSRRRTPSPERSRRQIPEEPTPGDIFEGRV
TSIMQFGCFVQLEGLRKRIEGLVHISELRAEGRVSQVSDVVKRGQKCKVKVISFTGTKTS
LTMKDVDQITGEDLNPGRTSRMKKPKIKDEELIGRNPDRPSDLQVSDVQDRSDSPKRINK
MSDMERWEIKQMVSAGCMDVTELPEFDEESGVLPKADSDNEDLEIELVEEEPPFLNGHTN
QSIDLSPVRIVKNPDGSLSKAAMMQGALAKERKEIKQQQREAELESEPTTSTKSWIDPMP
KEENPAASTSKSVSMIQGDIPEWKKHAFGGAKASYGKKTELTIIEQRQSLPIYKLKEQLV
QAIHDNQVLIVIGETGSGKTTQITQYIAEAGYTVRGKIGCTQPRRVAAMSVAKRVSEEFG
CRLGQEVGYTIRFEDCTSQETKIKYMTEGMMLRECLIDFELNQYSVIMLDEAHERTVQTD
VLFGLVKKYVQSRKDLKLIVTSATLDAVKFSEYFFGAPIFTIPGRTFPVEIMYTKDPEPD
YLDASMITVMQIHLTEPPGDILLFLTGQEEIDTSCEILFERMKSLGPEVPELIILPVYSA
LPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQNVYNSKTGIDQLV
VTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLATAVPELQRTNLTATVLSLKAM
GINDLLSFDFMDPPPMETLVTAMEQLYQLSALDDEGLLTRLGRRMAEFPLEPMLCKMLIM
SVHLGCSDEILTVVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDQLTLLAVYNSWKNN
KFSNPWCYENFIQARTLRRAQDVRKQMLGIMDRHKLDVVTCGKNTAKIQKAICSGYFRNA
AKKDPQEGYRTLVDQQVVYIHPSSALFNRQPEWIIYHELVLTTKEYMREVTAIDPKWLVE
FAPKFFKMGDPTKLSKQKKQLKLEPLYNRYEEPNSWRISRAYRRR
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggatgaattagaaaagcttgaatatttgtccctggtgtctaaagtatgcacggagctc
gacaatcatcttggaatgaacgataaagatcttgcagagtttattatttctattgctgac
aaacacccatccctgcccaagttctctaaagttttgaagaaaaaaggggcagagtttccg
gagactttcaccaaaaatttactctctctcattcagagaatgcggcctccaaaaaagaaa
aaaggcaaagaaggagaagagattctcgttgaaacggacgacggaagagggaaatataaa
ctcatgttcccggctctgtgtcgtgcggacgacgctcctgttcttcctgagcctccaaag
ataacagaagtggacaccaaggatgcagaagacacaatgaacgagttggagaacctcctc
gctcctagagaagagaggaaaaagggaagaggcggttccccgcatcgatccagggatcgg
gagagagaatcttctacaaggagatccaggcatgatagagatgattcaaggtcacgtcgt
gatcgttccagatctccacattctaaaagatccagagatgatcggagaagagatggaaga
gatcactcaagatctagaaggagatccccatcatctaggaggagaaccccatcacctgag
agatccaggaggcaaataccagaggagccgactccaggagacattttcgaagggagagtg
acttctatcatgcagtttggatgttttgttcaacttgaagggttaagaaaaaggattgag
ggtttggttcatatatcggagctgagggctgaagggagggtctcacaagtatctgatgtt
gtaaaaagaggacagaaatgtaaagttaaagtgatcagttttactggaaccaagaccagc
ctcacaatgaaggatgtagatcagataactggggaggatttgaatcccgggagaacctct
aggatgaagaagcctaagatcaaagatgaggagttaattgggaggaacccggatcgtcca
agtgatcttcaggtctcggatgtccaggatagatcagattctcccaagaggataaataag
atgtctgatatggaaagatgggagatcaaacagatggtgtctgcaggttgtatggatgta
actgaacttcctgagtttgatgaggagagcggcgtcctcccgaaggctgatagcgataac
gaggatcttgagattgaattagttgaagaggaacctccgtttttgaacgggcataccaac
cagagcattgaccttagccctgtgaggattgttaagaatcctgatggatccttatccaaa
gcagccatgatgcaaggcgctcttgctaaagagaggaaagagatcaaacaacagcagcga
gaagcggagttagaatcagagccaaccacctcaactaagagctggattgacccgatgccg
aaggaagagaatccagccgcttctacttctaaaagtgtgagcatgatacagggtgatata
cctgagtggaagaagcatgcttttggtggagcaaaggcttcttatgggaagaagacggag
ttaacgatcattgaacagaggcagagtcttcctatttataaattaaaggagcaattagtt
caagctattcatgataatcaagttttgatcgttatcggtgaaactgggtcgggaaagaca
acacaaatcactcaatatattgcagaagctggttacactgtgcggggtaagattggttgc
acgcagccgagaagggttgctgctatgtctgttgctaaaagagtttctgaagaatttggt
tgcagacttggacaagaggttgggtataccattcggtttgaagattgcacaagccaggaa
acaaagattaaatacatgactgaaggtatgatgttgagggaatgtttgattgacttcgaa
ttaaaccaatactcagttattatgttggatgaggctcatgaacgtactgttcaaactgat
gtcctgtttgggcttgtgaagaaatacgttcagtcccggaaagatttgaaattaatcgta
acttcagcaacattggatgccgttaagttttcagagtatttcttcggcgcgcctattttc
acaattcctggtcgcacgttcccagtcgagattatgtacactaaagaccctgaaccggat
tatttagacgcgtccatgatcacagtgatgcagatccatcttaccgaacctccaggtgat
atcttgctcttcttaactggacaggaggagatcgatacatcatgcgagatcctttttgaa
aggatgaagtccttaggtccggaggtaccggagcttatcatcctccctgtttactccgct
cttccatccgagatgcaaacgaggatctttgatcctgctcctcccgggagtaggaaggtt
gtcatagcaaccaacattgccgagacttctctcacaatagacggaatatattacgtggtt
gatcctggttttgtgaagcagaatgtttacaacagtaagacaggaattgatcagctcgtg
gtcacgcctatatcgcaagcacaagcaaaacaacgtgcaggtcgtgctggacgtacaggg
ccaggtaaatgttatcgattatatacagagcgtgcatatagagatgaaatgcttgcaact
gcagtaccagagttacaacggactaatctaacagcaactgtcttatctttaaaagcaatg
gggataaatgatcttctgtcttttgacttcatggaccccccgcccatggagactttggtt
acagctatggaacaactttaccagttaagcgctttggatgatgaagggttattgacaagg
ttgggtagaagaatggctgagtttccactagaacccatgctatgtaagatgttaattatg
tcagttcatcttggttgtagtgatgagatactcactgtggtttcaatgctgtctgtacag
aatgtgttttatcggccaaaagataaacaagcgttggcggatcagaaaaaagcaaagttt
catcaaacggaaggagaccagttgactctgcttgctgtgtataattcctggaaaaataat
aagtttagtaacccctggtgttatgagaactttatccaagctcgtacgcttaggagagca
caagatgttcggaaacaaatgttggggattatggatcgccataaacttgatgtcgtgact
tgtggaaaaaacactgctaagatacagaaagcgatttgcagcgggtactttagaaacgca
gcgaaaaaagacccacaagaaggttataggactcttgttgaccaacaggttgtttatata
catcctagcagtgctttgttcaacaggcagccagaatggattatatatcatgagttagtg
ttaaccaccaaggaatacatgcgtgaagttacagcaattgatccaaaatggttggttgag
ttcgcaccgaagtttttcaagatgggagacccgaccaagctaagtaagcagaagaaacag
ctgaagttggagccactttataacagatatgaagaaccaaactcatggagaatatcaagg
gcgtacaggagaagatag
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integrated database retrieval system
