Ciona intestinalis (yellow sea squirt): 100177677
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Entry
100177677 CDS
T01056
Name
(RefSeq) chondroitin sulfate synthase 3-like isoform X1
KO
K13499
chondroitin sulfate synthase [EC:
2.4.1.175
2.4.1.226
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
cin01100
Metabolic pathways
Module
cin_M00058
Glycosaminoglycan biosynthesis, chondroitin sulfate backbone
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
100177677
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
cin01003
]
100177677
Enzymes [BR:
cin01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.175 glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase
100177677
2.4.1.226 N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase
100177677
Glycosyltransferases [BR:
cin01003
]
Glycan extension
O-Glycan
100177677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CHGN
Glyco_transf_7C
Glycos_transf_2
Glyco_tranf_2_2
Motif
Other DBs
NCBI-GeneID:
100177677
NCBI-ProteinID:
XP_002131646
LinkDB
All DBs
Position
Unknown
AA seq
477 aa
AA seq
DB search
MSALKQIRNSQNVQFIFSFCVGWFVLGHFWTEEMDKAFKRGELNVQSYEEHCSCDHLAPV
CPPCNGVVDVQSQRQQNIKISESYYRTYKYKPLAHSEDLTNRWRMLTHKHQYEMINQEPR
VGLNGMWRVEVNQAEQQAKHIAIKNGAESSIEMKEIFQRVDAFHGTTYIVNYEAPDAART
VVEMNRPYIAGKPKLVSVDHVTNREIINIISPISKVSERFNNFLSRYEDNVLSSPSSGPV
RIIFVIFQPDDEHEVKYEDSVSHITDVLDKFRARNKRAMIEYIFTKGEFNRAVGLHAGVM
QCNDDEIVLFLDVDLKIGGDFLGRVRRNVVQHERAIFPIMFSQYDSDVMKHASTVDMELV
QDVEDPMQINKQTGFWIYYAFGVAAMYKSDYLKVGGFRLDIKGWGGEDVDLFKKMISDPH
INVMSIVDADLMHIYHKRGCDVTLAPDQYAMCVGAWAETLGSQRQVGTLYLNKHYEL
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgttaaaacaaattagaaattcacaaaatgttcaatttattttctcgttttgc
gtcggttggtttgtgctcggccacttttggaccgaagaaatggacaaagcattcaaacga
ggagaactgaacgtccaatcatacgaggagcattgctcatgtgaccacttggcccccgtg
tgtccaccgtgcaacggcgtcgtcgacgtgcaatcccaacggcaacaaaatattaaaata
tcggagagttattacagaacgtacaaatacaagccactcgcccacagcgaggatttaacg
aaccgttggcgaatgttgacccataaacaccagtatgagatgattaaccaggaaccccgg
gtggggctgaatgggatgtggagggtggaagttaatcaagcagaacaacaagctaaacat
atcgctattaagaatggtgctgagtcatcgattgaaatgaaggaaatatttcaacgagtc
gacgcttttcacggaacgacgtatattgttaattatgaggcccccgacgcggcccgcaca
gtggttgagatgaaccgaccgtacattgccggcaaacctaagttggtatcagtcgatcat
gtgaccaacagggagatcataaatattatttcaccaatttcaaaggtgagcgagaggttc
aacaactttttatcgcgatacgaggacaacgtgttaagttcaccgtcgtcggggcccgtg
aggattatcttcgttattttccaacccgacgatgagcatgaggtcaaatacgaggattct
gtatcgcatatcacggatgtcttggacaagttccgtgctcgaaacaagagagcaatgatt
gaatatattttcacaaagggtgaattcaaccgagctgttgggttgcatgcgggggtgatg
cagtgcaacgacgatgaaatagttttgtttctcgacgtcgatctgaagattggaggagat
ttcttgggtcgggttcgtaggaatgtggtacaacatgagagggccatctttcccatcatg
ttttcgcagtatgacagcgacgtgatgaaacacgcatcaacggtggacatggagttggta
caagatgttgaagaccccatgcaaatcaataaacaaactggattctggatttattatgca
tttggtgtggctgccatgtataaaagtgattatcttaaagttggagggttcaggttggat
atcaagggttgggggggagaggacgtcgatttattcaagaagatgatcagcgacccccac
ataaatgtgatgtctattgttgatgccgaccttatgcatatatatcataaacgtggttgt
gatgtcacactagcacccgaccaatacgccatgtgtgttggtgcgtgggcggaaacattg
ggctcgcaacgacaagttggaacgttgtatttgaacaaacattatgaattgtaa
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