KEGG   Ciona intestinalis (yellow sea squirt): 100177778
Entry
100177778         CDS       T01056                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03020  RNA polymerase
cin03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100177778
  09124 Replication and repair
   03420 Nucleotide excision repair
    100177778
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cin03021]
    100177778
   03019 Messenger RNA biogenesis [BR:cin03019]
    100177778
   03400 DNA repair and recombination proteins [BR:cin03400]
    100177778
Transcription machinery [BR:cin03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     100177778
Messenger RNA biogenesis [BR:cin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100177778
DNA repair and recombination proteins [BR:cin03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      100177778
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N RNA_pol_Rbc25
Other DBs
NCBI-GeneID: 100177778
NCBI-ProteinID: XP_002120172
Ensembl: ENSCING00000004991
UniProt: F6WM99
LinkDB
Position
3:1185963..1186732
AA seq 172 aa
MFYHISLEHEILLHPRYFGPNLLETVKQKLFTEVEGTCTGKHGFVIAVTTIDNIGDGLIQ
PGRGFVLYPIKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPADMKFD
PESHPPCYKTDDEDVVIQQDDEIRLKIVGTRVDANDIFAIGSLMDDYLGLIS
NT seq 519 nt   +upstreamnt  +downstreamnt
atgttttaccacatttctctggaacacgaaatacttttgcatccaagatattttggacct
aaccttctggaaacagtaaaacaaaagctctttacggaagttgaaggaacatgcacagga
aaacatgggtttgtgattgctgtcactaccattgacaatattggagatggtttaatacaa
ccaggaagaggatttgttttgtatccaataaaatacaaagcaattgtttttcggccgttt
aaaggagaagttgttgatgctgttgttactcaagtaaataaagttggactctttacagaa
atcggccccatgtcatgttttatatccagacactccatacctgctgatatgaaatttgac
cctgaatctcatccaccgtgttataaaacagatgatgaagatgtggttattcaacaagat
gatgaaataagacttaaaattgttggaacacgggttgatgcaaatgatatttttgccatt
ggttccctaatggatgattatttgggattgatcagttag

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