Ciona intestinalis (yellow sea squirt): 100177802
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Entry
100177802 CDS
T01056
Name
(RefSeq) CUGBP Elav-like family member 1 isoform X3
KO
K13207
CUG-BP- and ETR3-like factor
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100177802
Spliceosome [BR:
cin03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
100177802
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RNA_bind
RRM_5
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
100177802
NCBI-ProteinID:
XP_002121627
Ensembl:
ENSCING00000003762
LinkDB
All DBs
Position
2:5212125..5221383
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AA seq
498 aa
AA seq
DB search
MNGNSAGPPAHGDQPDPDAIKMFIGQIPKTWVESEVREFLEGYGPIYQLNILREKGSVMS
KGCCFVTFYTRKAALAAQNELHNMKTLPGMHHCVQMKPADSENKSEDRKLFIGMISKKMT
EQDLRQLFCPFGNIEECRILMNPDGVSKGCAFVTYSKRVSAQNAIRNMHQSTTMEGCSAP
IVVKIADSPKDKERKKTQSQLAMQLNQFSNQWKNLSGLAALAPVLQSLACNNQYNAPSNQ
HNSGVFSTTQLQQALTIAAAAQTLLSNQPSSVSHNNSNSVPGSSGISSMTSQYGGNVCAS
PSGTSYRSHSHNSNMWAQQHSAPYPSAGMNNGMSSGCSSTSPLDPMTMNLAQQSGSNLTL
DLNHSPSSTATGINPTAHMLAALTSPTSMYNQSMMHPHNSSPAGSHKEGPEGSNLFIYHL
PTHFTDHDLMQTFFTFGTIVSAKVFIDKQTNLSKCFGFVSYDNPASAQHAIQAMHGFQIG
MKRLKVQLKRPKGESKAY
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgaacggtaattcagcaggtcctcctgctcacggggatcagccggacccagatgcgatt
aagatgttcataggtcagattcccaaaacatgggttgaatctgaggtgcgtgagtttctc
gagggttatgggccaatctaccaacttaatattctaagagaaaagggtagtgttatgagc
aaaggctgttgctttgttacattctacactcggaaggctgcacttgctgcacaaaatgaa
ctacataatatgaaaactttgccagggatgcatcactgtgttcaaatgaagccggcagat
tcagaaaacaaaagtgaggatcgcaagctctttattgggatgattagtaaaaagatgacg
gagcaagaccttcgtcaattgttctgtccatttgggaacatagaggagtgtagaattctt
atgaatcccgatggtgtaagcaaaggatgtgcgtttgtaacttattcgaaaagagtttca
gctcaaaatgcaatacgcaacatgcaccagtccacaaccatggagggttgctctgcgcca
attgtagtgaagatagctgattcaccgaaggataaggaaaggaagaaaacacaatcccag
cttgccatgcaacttaaccagttctctaatcagtggaagaatctgtctggtttagcggca
ttagctccggttcttcaaagcttggcttgcaacaaccaatacaatgcacccagcaaccaa
cacaactcaggtgttttttcaacgacccagctccaacaagcactcacgatcgctgctgct
gctcagacactcctaagcaaccagccctcaagtgtctcgcacaataattccaactccgtg
cccggaagcagtggcatttcgtcaatgacatcacaatacggtgggaacgtgtgtgcgagt
cccagtggaactagctacagatcgcatagtcataattcaaacatgtgggctcaacaacat
tcagccccatacccaagtgctgggatgaacaacgggatgagttctggttgctcctccaca
agtcctcttgatccgatgacgatgaacctggctcagcaaagcgggagcaacctcacgctc
gatctcaaccattctccttcatctacagcaacaggtatcaacccaacagcacacatgctc
gctgcattgacttcaccaacttcaatgtacaaccaatcaatgatgcatccccataactcc
tctccagctggaagccacaaagaaggtcctgaaggttcgaacttgttcatttatcacttg
ccaactcacttcacggaccatgacctgatgcagacattctttacattcgggacgatcgta
tcggcaaaagtttttattgataagcaaactaatctcagcaagtgctttggatttgtgagt
tacgataacccggcgtcggctcagcacgcaatccaggccatgcacggtttccagatcgga
atgaagagacttaaagttcagctgaagcgtcccaagggcgagagcaaagcatattag
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