Ciona intestinalis (yellow sea squirt): 100177804
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Entry
100177804 CDS
T01056
Name
(RefSeq) palladin-like
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100177804
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cin04990
]
100177804
Domain-containing proteins not elsewhere classified [BR:
cin04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
100177804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
PDZ
Ig_3
Ig_2
PDZ_6
Ig_4
Sp38
Motif
Other DBs
NCBI-GeneID:
100177804
NCBI-ProteinID:
XP_002127748
Ensembl:
ENSCING00000023912
UniProt:
H2XKB3
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MSMVVTMTGGSPWGFKMTGGKDFRLPLAIGKVKAGGKASKCGVVEGYWIEKVNGEDFTNL
GHHEAQNKIKSAGATLVMELCKPKSKPPPQPTVTSLPTNNQTKATPQVTYQPGEHRYNKY
SAESDWQKSHQSQSPAMQKAYHKSVKAPLLTEAPAFTITPEIKELILEDEKTTESGLKAS
EVKTWQSQNGSTTPTPSPVPPPVPSNGNHSRAAANIGKFIKGPGANSYGEPDFTKPLQDI
SAPLGEPAVLEVRIAPILPTPSVHWYHNNKPARESKEKDIRFLCNGPVHTLVLGELSNET
LGMYTCTIMNKHGTKSSRCNVTVKNDGQKIQNRKPTVYIPPNQTQAPKQDSKRVIPSTSL
GLYSSRNVQESYDGQVNRPQQRKNSEESEVMRALREEDDDVTKQTRQTRAIKYLEQTLLP
ESDDL
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgtccatggtcgtgacgatgacagggggaagtccctggggatttaaaatgacgggtggg
aaagattttcgacttccgttggcgatcgggaaggtgaaagctggtggcaaggcatccaag
tgtggggtggtagaaggttattggattgagaaagtgaatggggaagatttcaccaacctt
ggacatcatgaagcacagaataaaatcaaaagtgcgggagctacacttgttatggagcta
tgcaaaccgaaatcaaaacccccgccccagccaactgttacatcactaccaactaacaat
caaacaaaagcgacaccccaagtaacttaccagcctggtgaacatagatacaacaaatat
tccgcggaatctgattggcagaaatctcaccaatcacaatcaccagcgatgcagaaagcg
tatcataaatctgtgaaagcccccctgctgactgaggcacctgcgttcacaattacccct
gagataaaggagcttattttggaagatgagaaaaccactgagtcaggtttaaaagctagt
gaagttaaaacttggcaaagtcagaatggaagtacgacccctaccccatccccggtccca
cccccagtgcccagtaatggcaaccatagtagagctgctgcaaacattggaaagtttata
aaaggacctggagccaatagttatggcgaacctgatttcactaagcccctacaagacatc
tctgcaccccttggtgaaccagcagtgttagaagtacgcattgcacccatactaccaacc
ccttctgtacattggtatcataataataaaccagcacgagaatcaaaggaaaaagatatc
aggtttttatgtaatgggccagtccatactttagtattgggggaactatcgaacgaaaca
cttgggatgtatacttgcaccattatgaacaaacatggaacaaaatcttcacgttgtaat
gtcactgttaagaatgatggacagaaaattcagaaccgcaagcctacagtctacatcccc
cccaaccaaacacaagcccctaaacaagacagcaagcgtgtaataccaagcacttccctt
ggtttatattcatcaaggaatgtacaagagtcgtatgatgggcaagtcaacaggccacaa
caaaggaaaaacagcgaggaatccgaagtaatgcgcgcactacgggaagaggacgatgac
gtcaccaaacagacacgtcagacccgagctataaaatatctagaacagacattgcttcca
gaatccgatgatctgtga
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