Ciona intestinalis (yellow sea squirt): 100177812
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Entry
100177812 CDS
T01056
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase RPAP2
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cin01009
]
100177812
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100177812
Enzymes [BR:
cin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
100177812
Protein phosphatases and associated proteins [BR:
cin01009
]
HAD phosphatases
Fcp/Scp phosphatases
100177812
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
100177812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
CTD7
Motif
Other DBs
NCBI-GeneID:
100177812
NCBI-ProteinID:
XP_026696661
LinkDB
All DBs
Position
2:complement(1396938..1398638)
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AA seq
455 aa
AA seq
DB search
MSDTSTKNKQKFDKKVLADARKKLLAEKRAQAIVEQLLESNVSEDLFQKSVYYLSVDRYA
DVVEERSITKICGYPLCSNSLKNIPRQQYKISNNVVYDITERKKFCSNFCYQSSKYIQEQ
IPTYPLWLRESDDKVRITLLKIGSGSKGEKVDLLHFVQPSDAEMESEFQDESQADATHNS
STDNNCREVRESRKKTTRIKLCDPTKSPGLVTRCNEKIKVDLDELVGLFGEWVTRKTLVR
LKLLPEDDTHVDVAPVDANEQRRAAKLKLLEERMNKIAGGKQIQEKQPLPSYEEVNEYGQ
RVEQYFRGQFTAVQGRHVMKPNKKKSDEEEDTTSQHVVPTVDSKNQLSIRKRILMEKFSK
SLSTIDSTMHNPAILQDIRCVVDTFNLTSKNVMLKPDQLVVVTLMILELLQRSSSFSNTL
LSSSVSAFLKTISLEIEEIKTAVEHIVEKIVSRPP
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatacttctaccaaaaataagcaaaagtttgacaagaaagtgttggctgatgca
agaaaaaagttattagcagaaaagcgagcgcaagctattgttgaacagttgctggaaagt
aatgtctccgaggatttattccaaaagtcggtttattacttgagcgttgaccgttatgct
gatgtagtggaagaaagatcaatcacaaaaatatgtggttatcctttatgttcgaatagt
ctgaaaaatataccaaggcagcagtacaagatttcgaacaatgttgtttatgatatcaca
gagcgaaagaagttttgcagcaatttttgttaccaatcatctaaatatattcaagaacaa
attccaacctacccattgtggttgagggaatctgatgataaagtgagaattactcttttg
aagattggatctggttcgaagggtgaaaaagtcgatctactacattttgttcaacctagt
gatgctgaaatggagtctgaatttcaggatgagagccaagcagatgccacacataattca
agtaccgataataattgtagggaagttagagaatcaaggaaaaagacaacccgaataaaa
ttgtgtgacccaacgaagagcccgggtttggttactagatgtaatgaaaagataaaagtt
gatttggatgaattggttggtttgtttggggagtgggtcacaagaaagactttggtaaga
cttaaattgcttccagaagatgacacccatgttgatgttgctcctgtggatgccaatgaa
caaagaagagcagccaagctgaagttgctggaggagaggatgaataagattgcgggaggt
aagcaaatccaggaaaagcaaccacttccaagttatgaagaagtgaatgaatatggtcag
cgggttgaacaatattttcgaggacagttcactgcagttcaaggtagacatgtgatgaaa
ccaaacaaaaagaaaagtgatgaagaagaggacacaacttcacagcatgttgttcctact
gtcgattcaaagaaccagttaagcataagaaaaaggatattaatggaaaagttttctaaa
tcgctttcaactattgactccaccatgcacaatccagcaattttacaagacattcgatgt
gtagtagacacttttaatttaacgagcaaaaatgtcatgcttaagcctgatcaacttgtt
gttgtcaccctcatgattcttgaattgttacaaagaagttccagtttttcaaatacttta
ctttcatcatctgtttctgcatttttaaaaactatcagcctagaaattgaagaaattaaa
acagctgttgagcacattgttgaaaaaattgtttctaggcccccttaa
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