Ciona intestinalis (yellow sea squirt): 100177852
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Entry
100177852 CDS
T01056
Name
(RefSeq) polypyrimidine tract-binding protein 1-like isoform X2
KO
K13218
polypyrimidine tract-binding protein 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100177852
03041 Spliceosome [BR:
cin03041
]
100177852
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
100177852
Spliceosome [BR:
cin03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
100177852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_PARP14_3
MukB
Motif
Other DBs
NCBI-GeneID:
100177852
NCBI-ProteinID:
XP_002127727
LinkDB
All DBs
Position
8:complement(5826819..5846516)
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AA seq
516 aa
AA seq
DB search
MKVMNFYEPSYGTKRNSDDPSRLGSVDNGAKKMKLDPSQISKVVHLRSLPGDVTDNEVIQ
LGLSYGHVTNVLMLKGKNQAFLEMEDEEIANQMVSSSGISPPTIRQRIIYVQFSNHKELK
TDSSPNQLKTQAILEAMQKRDGGPNHVLRAVIENMLYPITLDVLHTIFSKFGVILKIITF
TKSSQFQALIQMADALQSQTAKLSLDGQNIYNGCCTLRIEYSKLSSLNVKFNNDKSRDYT
RNDLPSGEASILGTGSTLQSMLGGAGLMPSPYQNNIAAAIQQSQLASLANASGALQHLTG
TNMAGNSNHMVTQLAAMVGQTSVLHVSNLNEEMVTPQSLFILFGVYGDVNRVKIMYQKKS
NALVQMNDHQQAQTVIKYLHGVKLYDRPLQIMMSRHNQVQMPREGQEMAKLTQDYSNSPL
HRFKKPGSKNFQNIFAPSEVLHLSNIPNDTEENFLRSKFEEVGVVVGFKFFVKDRRMALI
QMSSLEEAILCLVNLHNLKLGESNHLRVSFSKGQIN
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgatgaacttttacgaaccttcatacggaacaaagaggaacagtgatgatcct
tccagacttggaagtgtggataatggggctaagaagatgaagttggatccaagccaaatc
tcgaaagtggttcacctacgtagcttgccgggtgacgtaactgacaatgaggtcatacag
cttggtttgtcatacggacatgttaccaatgtcctcatgctaaagggcaagaaccaagct
ttccttgaaatggaggatgaagaaatagccaaccagatggttagcagtagtggtataagc
ccacccactataagacaacggataatttatgttcagttctcaaatcacaaggagctgaag
acagacagctcgccaaaccaactgaaaacgcaagcgatcctcgaagcaatgcagaaacgt
gacggtggtcccaaccatgtattacgtgctgtgattgagaacatgttgtatcccatcacc
cttgatgttctgcacacaatattctccaagtttggagtaatattgaagatcatcactttc
actaaaagcagtcaattccaagccttgatacaaatggctgacgccctgcaatcacaaaca
gctaagctttctcttgatggccagaacatctacaatggttgctgcaccctccgtatcgag
tatagcaaactatcctcgctcaatgtaaagttcaataatgataagagtcgtgattacacc
aggaatgacttgccaagcggtgaagcttcaatactcggcacagggtcaacactgcagtct
atgctaggaggtgcagggttgatgccgtcaccgtaccagaacaacatagcggccgcaatc
caacaatcacaacttgcgtcacttgccaatgcttcaggtgccctgcagcatcttacggga
acaaacatggcgggcaactcaaaccatatggtgacacagcttgcagctatggtgggccaa
acatctgtgctacatgtgtctaacctgaatgaagagatggtcaccccacaaagtctcttt
attctattcggtgtatacggcgatgtgaacagagtgaagataatgtaccagaagaaaagt
aacgcgcttgtgcagatgaatgatcaccaacaagcacagacagtgataaagtacctgcat
ggtgtgaagttatacgaccgtccattacaaataatgatgtcacgacacaaccaagtacaa
atgccaagggaaggacaggagatggccaagcttacacaggactacagcaactcccctcta
cacagattcaaaaaacccgggtcgaaaaatttccaaaatatttttgctccatctgaagtt
cttcatctgtctaatataccaaacgacacagaagaaaattttcttcgttccaagtttgaa
gaagttggagtcgtggttggcttcaagttttttgtcaaagacagaaggatggccctcatc
caaatgtcgtcgctggaagaagcaatcttatgtcttgtgaatttgcacaatttaaagtta
ggggaatccaatcaccttcgcgtttctttctccaaaggccagattaactga
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