Ciona intestinalis (yellow sea squirt): 100177856
Help
Entry
100177856 CDS
T01056
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 23-like isoform X1
KO
K15166
mediator of RNA polymerase II transcription subunit 23
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100177856
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Other mediators
100177856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med23
PUA_2
BLM10_N
Motif
Other DBs
NCBI-GeneID:
100177856
NCBI-ProteinID:
XP_009858310
Ensembl:
ENSCING00000001495
LinkDB
All DBs
Position
4:complement(2780840..2802240)
Genome browser
AA seq
1391 aa
AA seq
DB search
MSVESQLEAVFGKALNTDIIVEVFTGFVSLANLDHTKRLKTCIKDFRTLYNSQSTEEHVT
SITLLIKFIHKQQHPRRISFMFDFLETCIQDGFLLPRPVLDQLQGAELVHTNRLHWCRTY
EVIRKFVHMVDYKGCRNLLHSMVLKMTQIPQSVWIEEKQQVDAICSTIQLLLDPEACLLP
GYLAVNEIRQNMQDDLLDAPWPLLGKLTEFIDRFRATATMVSTTARWMLLPVVDHAFYQL
PSTWKLEADTLRFQLKKQLPYRPEMYQRQHRLLNYILDQTYSRDMVLQVLGMQKHQKQRC
EALEMGLVDLMFSTVKKCSTFEDKSNIQHLMWQHVACQVIYFVLYQLASFPHIVEDLHTK
LAASEELRDQCIQGGRDYIMWVLLQFISGSIQKNPLSDFLSVIKLVNLLYPEKQPLELPE
MKSHSCTISFAAVCNLVHLNRKAQAKPPSDGNQDRNQQWNIPVALHNQHECIKQCLKTTS
INLKDSQVALISNACSSNTEMFNMAVSVLVESVFGDTSSTSPMPGNNCVAFNKTVPCSMD
LLDTLTVHTKMSMLHSISTKIQKFAQAKSSVGLAPALVETYSRLLIYYEIETLGIKILVS
QVVPKVYEYRAWGILNTLLELMSYRMHHIQPNYRIQLLTHLHTLANSPHANQRQLHLRLE
STALKLIMGFDNFGIKPQLVRMFNEQKQSIVSQKSEELNRVLVLTLARSIHITGAESISG
SWCTDILKAVMSATPHRWPQQTLACFPQSIQDFFNHSNVEPLNKKQLKTNVEQEYIKWAP
LLSADGMDSSSSSGSSLTEADALNHFSQPGTPPYYLCLLWKVLFEEKKLSSTSYKVLERI
GASQLSQHVRKFSDFLVYEFSVLEGGSDVKICANVLQDMVWKYNIVFLDRLILCLALRSS
EANDVQVAFFIIQYLLIKPDDFLNRVRSFDHDVENLDHWMQDDWHAKHMAYHQKFPEHYF
FEGLVAHCSSPEQPNATGEKPQPTYLPTYFCNITLRFLPVLDIVIHRCLELPPSSKSLET
LLEHLGLLYKFHDQPVTYLFNTLHYYESKLRGRHLLKKKLVSTIIGAITKNKPPGWILSE
TFMDYLQQPNDQQWQPDSVYYCQLIQRLANTVGGKMTSSFSSRDWRFNEFPNASSHALHV
TCVEALALPLPGEQVGQALMDVVLKTQSFVEREQSLPWLNAVALVLTALPEIYWKPLHQN
ILKMLQCPTLTADIEPGSSYPYHILSYSNQQLSFTDMPCTRLLALTHVVWHHMSIGQLSL
VSQFLKEEAKPLIETELQLLYIFHLIGPYFPRFQLERTRCMMDVAQLLYNILLRVSKHSS
EIHFADEIADFLYHVKYMHIGVAINDRVEEVVVQLQPKLRKRLQFITQAPASSAARQQSA
QVHSNTTTEKM
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttgaaagtcagttggaagctgtgtttggaaaagcattgaacacagatataata
gttgaggtgttcactggattcgtgagtttagcaaatctcgatcacaccaagcgtctcaaa
acttgtataaaagatttccgaacattgtacaactcgcaaagcacggaagaacatgttact
tcaattaccttactgattaagttcatccacaagcaacaacatccacgtaggatcagtttc
atgtttgatttcctggaaacatgcattcaagatggttttctactaccaagaccagtttta
gaccaacttcagggagcggaactggttcatacaaatcgtttgcactggtgtcgaacttat
gaagtgataaggaagtttgttcatatggttgactacaaggggtgtaggaaccttttgcac
agtatggttcttaagatgactcaaattccacagtcagtttggattgaagagaagcaacag
gttgatgcgatttgtagcacaattcaactcttacttgatcctgaagcttgtttgctgcct
ggatatcttgctgtgaatgaaattcgtcaaaatatgcaagatgacttactggatgcaccc
tggcccttgttgggtaaattgacggaatttattgatcgttttcgagccacagccaccatg
gtatccactacagcaagatggatgttgttaccagtagttgaccacgctttctatcaacta
ccaagcacttggaaactagaagccgacacgttgaggtttcaactgaaaaaacaactgccg
tacagaccggaaatgtatcagcgacaacatcgcctcctgaactacatacttgatcaaact
tactcgcgagacatggtcctacaagtgctgggaatgcagaagcatcagaaacaaagatgt
gaagctttggaaatgggcttagtggaccttatgttttctaccgtgaaaaaatgttctact
tttgaagataaatccaacatacaacacctcatgtggcaacatgtggcttgccaagtcatt
tattttgttctttatcaacttgcaagctttccacatatagtagaagatttacatactaag
cttgcagcatcagaagagctaagggatcaatgcatccaggggggtagggattatataatg
tgggtcttacttcagttcatatcaggaagcatccagaaaaatcctctcagtgactttttg
tcagtgattaagttggtaaacctgctgtacccggaaaaacagcctcttgaacttcctgag
atgaaaagtcactcgtgcacaatatccttcgcagctgtttgcaatctggttcatttaaac
agaaaagctcaagctaaacctccatcagatggaaatcaagatcgcaaccagcaatggaac
attccagtagctttacacaaccagcatgagtgtatcaagcaatgcttaaagaccaccagc
ataaatttaaaagactcacaagtggccctaataagcaatgcatgtagtagtaacacagag
atgtttaacatggctgtatctgtgttggttgaaagtgtgtttggtgatacgagttccact
tcccctatgcctggaaacaattgcgtggctttcaataaaacggtcccatgctctatggat
ctgctcgacacattaacagttcacactaagatgagcatgttgcacagcatctcaaccaaa
atacagaaatttgcgcaagccaaatcatcagtaggtcttgctccggctctcgtggaaaca
tacagtcgtctacttatttattatgagattgaaacacttggaataaaaatcttagtttca
caggttgtgccaaaggtttacgaataccgagcatggggaatactgaacacactgttggag
cttatgagttaccgcatgcatcatatacaacctaactatagaattcaactcctaacgcat
ctgcacacactggctaactctccacatgcaaaccaacgccagttacatctcagacttgaa
agcaccgccctcaaacttatcatgggttttgacaactttggcatcaaaccacagctagtg
aggatgtttaatgagcagaaacaaagtattgtgtcacaaaaatccgaagaattgaatcgt
gttcttgtattgacacttgctaggtctatacacataacaggtgctgagagcatctccggt
tcatggtgtacagatatacttaaagctgtaatgtcagccacaccacataggtggccacag
cagacacttgcatgcttcccacaaagtattcaagatttcttcaaccattcaaatgtggaa
cctttaaacaaaaaacagctgaaaacgaacgtggagcaagaatacatcaagtgggctcct
cttctatcagcggatgggatggactcttccagctcctctggaagttccctaactgaagca
gatgctctgaatcatttctcgcaaccaggcacgcccccatattacttgtgcttgttatgg
aaagttttatttgaagagaagaagctgtcatccacatcttataaagtattagaacggatt
ggagcaagtcaattatctcaacatgtgcggaaattttcagattttctcgtttatgagttt
tcagtccttgaaggaggcagcgatgttaagatatgtgcaaacgtacttcaagacatggtg
tggaaatataacattgtgtttcttgaccgacttattctgtgtcttgctctacgttctagt
gaggccaatgatgtccaggttgcattcttcatcatccaatatcttctcatcaaacctgac
gacttccttaacagagttcgtagttttgatcatgatgttgaaaaccttgaccattggatg
caagatgattggcatgccaaacatatggcttaccatcagaaatttccagaacattatttc
ttcgaagggctggtggcgcattgttcaagccccgagcaaccaaatgcaacaggagaaaaa
ccacagcccacctacctaccaacatacttctgcaatatcaccttacgtttcctaccagtg
cttgacatcgtgatacatcggtgtctggagcttcccccttcttctaaatcattggaaaca
ttgctggagcatctgggcttgctgtataagtttcatgatcaaccagtcacttatctattc
aacacccttcattattatgaaagcaaacttcgtggtcgacatttgcttaagaagaaactt
gtctccactatcattggtgctatcactaaaaacaaaccgccaggttggatattatccgag
actttcatggattatttgcagcaacctaacgaccaacaatggcaacctgactcggtttat
tattgccaacttatacaaagacttgcaaatactgttggaggaaaaatgacttcatcattt
tcatcacgtgattggagatttaatgagtttcccaacgcatcatctcacgcgcttcacgtg
acttgtgttgaagcacttgctcttccattacctggtgaacaagttggacaagctcttatg
gatgtggtgctcaaaacgcagtcttttgttgaaagggagcagtcattaccttggttaaat
gcggtagcactggttcttacagctttgccggaaatatattggaaaccactgcatcagaat
atattgaagatgttgcaatgtccaacattaactgctgatattgaacctggttctagttac
ccataccacatcttatcctactccaaccaacaactatcattcactgacatgccgtgtacc
agactactggctctaacccatgttgtgtggcatcatatgagtattggacaactatcactg
gtctcacagtttttgaaagaagaagcaaaacccctgattgaaactgagcttcaactactt
tatattttccatctcattggtccttactttccccggtttcaactggaacgaaccagatgt
atgatggatgttgcacaacttctttataacattctgcttcgtgtaagcaaacactcatcg
gaaattcacttcgccgacgaaattgcagattttctctaccatgtcaagtacatgcacatc
ggggtagccatcaacgacagagtagaggaagtagtcgtacaattacaacctaaacttcgg
aaacgacttcaattcatcacacaagcgcccgcctcgtcagcggcacgacaacagtctgcg
caggttcattccaacaccactacggaaaaaatgtga
DBGET
integrated database retrieval system
