Ciona intestinalis (yellow sea squirt): 100177860
Help
Entry
100177860 CDS
T01056
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100177860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100177860
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100177860
mRNA degradation factors
5'-3' decay
Decapping complex
100177860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
Beta-prop_HPS5
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
NTP_transf_4
GCN5L1
Motif
Other DBs
NCBI-GeneID:
100177860
NCBI-ProteinID:
XP_009857971
LinkDB
All DBs
Position
3:complement(1534472..1563524)
Genome browser
AA seq
1384 aa
AA seq
DB search
MEASNGLPIQNGHHELSNSLKEMLKINSSNTSTVQDAFDVSHDGSGDHRLHISSLSVSQA
YAVDSDTISSTAEDKPQETDLQNIFLDKASDGECVSLHGPHTRIHASSASELESQASASN
KVKINTITKFDWEHRYYAGNLLTVTDMYIAYCIKGRNGYSVRVINRNNSSDRVLLKGFTG
AVCDVGFAPHTGCNILAAVDSVGNLIVWSLEQEDGHLVEKKRIHLTATPGMCEASQNHRV
MWIPYIQRDEEEESSYGSKAETTESSPPKILVLVYSKVAEVWDLDIAFAVADALPENGAT
RLDLSHAYVSVTGESDADISDCELSPIGNVLAAASTDGFVKFWQVQIEEPQPPTCLHQWK
PHDGKPVSCVKFCDNKKQPENSIFWRFLLTGCERNNELKIWCTVTWNCLQVVDFFPSTPA
HAVPELNLVLYLSADFLVLSDVHRKILYVMQCKTNIKDGTAQLSSIAHFQLTSPLLSIAF
VDARPCKFKALVDSSHDDHNKDQELSGSEDEDQHEDEDDDDEDGRIRSKSGDSKSEGDVS
NKLDGVLIKLITIQTRSLQSLDVRFISNDDSDIDENPRSLSTYNTISEDLKDIVSLSSME
ENFSHCGGEVGKSIDDGDFMAGGDAALAKFVESTQEKIMTDSEHQMSPDVVEHHEIFQID
DNSLEDDEKVEIVVDDEEGAMKASPDITHSNNQPVLLTPDAFISSFKSPGTVGDSANSSF
TTVTPFSNHPVCDQQLNNFLIGGARGSLTNLMISSSSVASEKPPDVENSSIPSSSPVLPR
ASSSPSAAPEVNFPPRSVKSPDLISSTSTQDGEGAKAPDPSSAVVIPKSLSTVLSRSYSD
SSAAVMVPSISEPFSQMLRPVTSTQWPKAPDVTMSRPVVVGSPPAAASGSVDNWPPVEPM
DRAIPHQIQPVEPDHQPTQSPQPSHNDDIIQLINNFKEEQKLMMINHQKELQSIIKKQNQ
LQKSSDASTKKTDNQVDKLDKAVRAVSENQKKLSTDFKLMQSGVTEATAGKIDRIIKSEI
KRTILPGMNQTLESVKGDLTNIVSQKLTATDVILRENIPKVLRSKDIVDHIGTSTAKAIH
SQVQGSLPEIFFTTLIPAFERSCQNMFQQLSTTYHRGMEETLLKLEKQMTVRVKPDNDRL
QTLIKDAYTAGTELQNASKLATSDIANVMKDIPNQIEKAFTRCEERLKEKQEETFAEQRR
VITNLIRDVITRTVDEKLSQGGAEASVLGAAAVVGTSPHLMVNRPSILDQQQQILKMLQQ
GNVNTAFQTALTASDLNLVMYVCETVDPSVVFGVSPCPLQQPILLSLIQQLSSDLGTKTD
IKLKYLQEAVMNLDRRHQVTQEYMHSVLSALVQKLNKCLLEPLEKPSLSKDLKMLAMAAQ
SLMK
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggaagcctccaacgggttgccaatacagaatggacaccatgagttgtctaattctctc
aaagaaatgttgaagataaacagctcgaatacttcaactgttcaagatgcttttgatgtg
agtcatgatggctcaggggatcacagacttcatataagctctctctctgtttctcaggcc
tatgcggtggattcagacacaatttcatcaactgcagaagataaaccacaggaaacagat
ttacaaaatatttttcttgacaaagcatcagacggagaatgtgtttcactgcatggacca
catacacgtattcatgcaagctctgcttctgaattggagagccaagcttcggccagtaat
aaggtgaaaatcaacactataactaaattcgattgggagcatcgctattatgctgggaac
cttctcaccgttactgacatgtacattgcttactgtataaaaggccgcaatggctattcg
gttcgtgtcatcaatcgaaacaattcttcggatcgagttctgttgaaaggtttcactgga
gcagtgtgtgatgttgggttcgcaccacacacagggtgtaatatcttagctgcagtggat
agtgttggaaacctcattgtgtggagcttagaacaggaagatggacatcttgttgaaaag
aaaagaattcatctcacagccactcctgggatgtgtgaggcatctcagaatcatcgagtg
atgtggattccttacatccagcgagatgaggaggaagaatcatcatacggttcaaaagca
gagaccacagagtcctcccctcccaaaattctggttcttgtgtattcaaaagtggccgaa
gtatgggatttggatattgcgtttgctgtggccgatgctttgccagaaaatggggccacg
aggttggatttatctcatgcttatgtatctgttactggcgaatccgatgcagatatcagt
gattgtgaattgtcaccaattggcaatgtgttggctgcagcaagcactgatgggtttgtc
aagttctggcaagttcaaatagaagaaccacagccacccacatgtcttcaccaatggaaa
cctcatgatggaaagccagtatcttgtgtgaagttttgtgataataagaaacagcctgaa
aacagcattttctggagatttcttttaaccggttgcgaacgaaacaatgaacttaaaatt
tggtgcacagtcacttggaattgtttgcaggttgttgatttttttccatccacccccgca
catgctgtacctgaactaaaccttgtgttgtatctttctgctgactttcttgttctatct
gatgtacacaggaagattttgtatgtgatgcaatgtaagactaacatcaaagatgggaca
gctcaactttcatctatcgcacatttccaacttacgtcaccattactcagcattgccttt
gttgatgcacgaccatgtaaattcaaggcgctggtcgacagttcgcatgatgaccataat
aaggatcaggagttgagtggatcagaagatgaggatcaacatgaagatgaagatgatgat
gatgaggatggtaggatcagatcaaaatcgggtgatagcaagtcagagggagatgtcagc
aacaaactggatggagtgttgattaaactcataacaatacaaaccaggagtttgcaatca
cttgacgtccgatttatttcaaacgacgactcggacatcgacgaaaaccccagaagctta
agcacttacaacacaatatcagaagatttaaaggatattgtcagcttgagcagcatggag
gaaaatttttcccattgtggtggggaggttggtaagagcatcgatgatggggatttcatg
gcagggggggatgctgctctggcaaagtttgtggagtctacacaagagaaaatcatgact
gattcagaacatcagatgtcgccagatgtagttgaacatcatgaaattttccaaattgat
gataactccttagaagatgatgagaaagttgaaattgttgtagatgatgaggaaggagca
atgaaagcatcaccggatataactcattcaaacaaccaacctgttcttctcacacccgat
gctttcatcagttcatttaaaagtccagggacagttggagattcagccaacagcagtttt
acaacagtcaccccattcagcaaccaccctgtgtgtgatcaacaacttaacaacttcctt
attggtggggcaagaggttcattgacgaatctcatgattagttcatccagtgttgcaagt
gaaaaacctccggatgtagagaattcatccattccttcatcatcacctgtgctccctcgt
gcatcttcttcaccctctgctgctccggaagttaattttcctccaagatcagtaaaatct
ccagacctcatctcctccacctcaactcaggatggagaaggagcaaaagccccagatcct
tcatcagctgtggtcatccccaagtctttatctactgtccttagcagaagttactcagac
tccagtgcagcagtaatggtaccttctatatctgaaccattttctcaaatgctgcgacca
gtgacgagcacccagtggcccaaagcaccagacgtcacaatgtcccgcccagttgtagtc
ggttcaccaccagcagcagcaagtggttccgttgataattggccaccagtagaaccgatg
gatcgagcaattcctcaccagattcaaccagttgaaccggatcaccaacccacccaatca
ccccaaccctcccacaatgatgacattattcaactgatcaataattttaaagaagaacaa
aagttaatgatgatcaatcaccagaaggagctacagagcatcattaagaaacaaaaccaa
cttcaaaaatcaagtgatgcttctactaaaaaaactgataatcaagttgacaaactcgat
aaggctgtcagagcagtttcagagaatcagaagaaattatcgactgatttcaagttgatg
cagtctggtgttactgaagcaactgctggaaaaatcgaccgtataattaaatccgaaatt
aaaagaacaatcctgcctggaatgaaccaaacattggagtcggtgaagggagatttaaca
aacattgtgagtcagaaactcacagcaaccgatgtgattctcagagaaaacattccaaaa
gttttacgttctaaggatatagtcgaccacattggaacatcaactgccaaggccattcac
agtcaagtacaaggttcactaccggagatatttttcactacattaattccagcatttgaa
agatcatgccagaacatgtttcaacaactaagtacgacttaccacagggggatggaagaa
acgttattaaaactggagaagcagatgacggtgcgtgtgaagccagacaatgatagattg
cagacattgatcaaggatgcatacactgctggtactgaattgcagaacgcatcgaagtta
gcaacatcagacattgccaacgttatgaaagatataccaaaccaaattgaaaaagcattt
acaagatgtgaggaacgcttaaaagagaaacaggaggaaactttcgctgaacaacgtcgc
gtcatcaccaacctcattcgtgatgtcatcactcgtactgtggatgagaaattatcacaa
ggtggcgctgaagctagtgttctaggagcggcagcagtagttgggacttccccacatctc
atggttaatagacccagtatattagatcagcagcaacaaatattgaagatgctgcaacaa
ggaaatgttaatacagctttccaaactgctcttactgcatctgaccttaaccttgtcatg
tatgtttgtgaaactgttgacccatctgtggtgtttggagtatctccttgccccctgcaa
caacccatactgctgtctctcattcaacaactttctagtgaccttggtaccaagactgat
ataaaactgaagtatttacaagaagctgtgatgaacttagatcggcggcaccaggttacc
caagaatacatgcacagcgtactaagtgcactggttcagaaactaaacaagtgtttgctg
gaaccactcgaaaaaccgagcctttcaaaagatctaaagatgcttgcaatggctgcacaa
tctctaatgaaataa
DBGET
integrated database retrieval system
