Ciona intestinalis (yellow sea squirt): 100177906
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Entry
100177906 CDS
T01056
Name
(RefSeq) collagen alpha-1(XXVIII) chain-like isoform X1
KO
K23619
collagen type XXVIII alpha
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cin01002
]
100177906
Peptidases and inhibitors [BR:
cin01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
100177906
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GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_4
MGC-24
DUF5852
Motif
Other DBs
NCBI-GeneID:
100177906
NCBI-ProteinID:
XP_018672977
LinkDB
All DBs
Position
2:complement(7646855..7671011)
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AA seq
1204 aa
AA seq
DB search
MKVLCVAVALILLINTDASGKRHKMQTSVRNVQGDDPLLEVEPIPPDTMLGECSCKCCEN
TPAPIIQPKCANDIIMAVDSSACFRDHHAKMMRFLRKLVRRIGRTENIQYGGTETRLGIM
QFSSDILFPLHLNSFEDYTNPSTRRGLMSGIEQALSTLGFLGEGSFLNKALNATVDHFQS
EPRPEELLTQISPQTPKPVVILMTNGKSHPSVTMDDIELSIAGLKAAGVTVIPVSVTREC
HGVQNDVWNEGLCPDTIILNKLAKVGRDETSTFFEMKSHDVLADVINELTDCYSHGPANL
VAPCNNCTCSCELPIGPIGPDGPKGQKGEPIKGEQGPKGELGIPGIDGLDGDKGEVGNKG
DNGEKGDIGPKGVIGDIGAKGDKGEFGDKGDTGFKGEIGEKGDLGKKGIKGTVGEKGDVG
QKGNIGDKGEIGEDGPEGPKGTKGNQGDQGEKGVGEKGGKGETGPEGSKGDTGNKGNTGN
KGNKGMIGLCGKPGPAGKPGVEGVAGLDGLDGGPGQPGIQGPRGPRGDDGDKGEPGPQGA
SGFPGQRGLAGERGPIGPQGLNGGKGEKGEPSSELGLPGLPGSSGLVGEPGRDGADGLDG
AQGVPGDRGPRGEPGPRGHPGTYDLDELRGVISEIVRELLPGDCAAPAPNRCQEYPVDIT
FLVDGSDSIDREDFDRVKQWILLTVDAFNPGERRNPLHVDVVQFSERSMIEVDSDVASSA
QISDQVQGIIQMRSGTKTYSALEFVNREVWPLLRPGAFKILITMTDGDASEDRNVDAIEE
ANNKYNLMAAVGVGSKVISSELEDFSSTGNVFNVDNFSALESIISDIVENICAGIKEIEV
DEEPAPPDVTTDEDDDEDQLDVGDSISSDANDICGQEPPFGNCNPNGDTDVVGKYYWNKA
RQNCVWFHYKNCPGGNVFDTEAECDDRCRPLVAPTTTSIATTTTVAPTTTTIKPTPTPTV
PTAAPTSPSGIGCSNARVDLAFVLDGSASVGEDGFVLLREFLINVVSAFTNIGNDGVQVA
MIQYNDNPRMEFDFEQTVDKTSVLDAIDGLVYMGGNTKTGLALTFLQSAYEDARPHSDKV
AVVVTDGRSQDDVIIPSQQLKREGTTIFAIGVGEAERMELVEMASVPVDKFVFSVDDYTD
IASIQENLIKQICGVTRGVFRSAAGVDFTPEDDKLIPVVTTTSPILEEEYDGSGELEYEY
EGSS
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttctttgcgtggcagtagcgctgatactgctgataaacaccgatgcatcagga
aagcgtcacaagatgcaaactagcgtgagaaacgtccagggagacgatccgcttctggaa
gttgaaccgattcccccggacacgatgctcggcgaatgctcgtgcaaatgctgtgagaac
accccagcacctatcatccaaccaaaatgtgccaatgacatcatcatggctgtggacagc
agcgcttgcttccgtgaccaccacgcgaagatgatgaggttcctccggaaactagtaaga
aggatcggaagaactgaaaacattcaatacggaggaacagaaacaaggctgggaataatg
cagttcagcagcgacattctcttccctctccatcttaactccttcgaagattacaccaat
ccatcaacacgtagggggttaatgtccggtattgaacaagccttatctactctcggtttc
ctcggtgaaggatctttccttaacaaagccttgaacgcgaccgttgaccatttccaaagc
gagccacgcccggaagaacttcttacgcagatttccccacaaaccccaaagccggtcgtt
attttaatgacgaatggtaaaagccacccaagtgtgactatggatgacattgagctctct
attgctggtttgaaagcagctggagtcacagttattccagtttccgtcacccgggaatgc
catggagttcagaatgatgtttggaacgagggcttgtgtcctgatacaatcattttgaac
aagttagccaaagttggaagagacgaaacctcaactttctttgagatgaagtctcatgac
gtattggctgacgtcatcaacgagcttacagactgttactcccatggacctgcaaactta
gtagcaccttgcaataactgcacttgctcttgcgagcttcccatcggacccattggaccg
gacggaccgaaaggtcagaaaggagaaccgatcaagggtgagcaaggaccaaaaggagaa
ctcggaatccccggtattgacggcttggacggcgacaagggagaagtgggcaacaaggga
gacaacggagagaaaggagatattggtcctaagggagtaatcggagacattggagcaaag
ggcgacaaaggcgaattcggcgacaaaggtgacactggattcaaaggagaaatcggagaa
aagggagaccttggaaaaaaaggaataaagggtaccgttggtgaaaaaggagacgtcggg
cagaaggggaatattggggacaagggagaaatcggcgaagacggcccagaaggtccaaag
ggaaccaagggaaaccagggagatcagggcgaaaagggagttggcgaaaagggtggcaaa
ggcgagactggcccagaaggttcgaaaggagacaccggtaataaaggaaacacaggaaat
aagggtaacaagggtatgattggactgtgtggaaagcctggacctgctggaaaacctggt
gttgaaggcgtcgctggtttggacggtctggatggcggacccggtcaaccaggtatccaa
ggaccaaggggacctcgcggagacgatggcgacaagggtgaaccaggtccacagggagca
tctggtttcccgggacaacgtggtttagcaggagagagaggaccaattggaccacagggt
ttgaacggaggcaaaggagagaagggcgaaccatcaagtgaattgggactcccagggttg
cccggaagttctggtctagttggtgaaccaggtcgagatggtgctgacggattggacggc
gcacaaggtgtacccggtgatcggggaccaagaggggaaccgggacctcgtggccaccca
gggacttatgatttagacgaactacgtggagtgatcagcgagattgtaagggaattgttg
cccggagattgcgctgcaccagcacctaatcggtgccaggagtacccggtcgatatcacg
ttccttgtcgacggtagcgactccattgaccgtgaggatttcgaccgagttaaacagtgg
atcttgttaactgttgacgcatttaaccctggggagagacggaacccgttgcatgtcgac
gtcgtacagttctcggaacgcagcatgatagaggtggactcggacgtcgctagttcagcg
cagatttctgatcaagttcagggaataatccaaatgaggtcgggaactaagacctacagt
gcgttggagtttgtcaatagagaagtatggcctctgctgcgacctggcgcttttaagatt
cttatcactatgacggatggtgacgccagtgaggacaggaatgttgacgctattgaagaa
gcgaacaacaaatacaacttaatggcagctgttggtgtggggagcaaggttatatcgtcc
gagttggaagatttcagttctactggcaacgtgtttaacgtggacaacttctccgccctt
gaaagcattatttccgacatagtggaaaacatatgcgctggaataaaagaaattgaagta
gacgaggagcccgcacccccggatgtcacaaccgacgaagatgatgacgaggaccagctt
gacgtcggcgattcaatctccagcgacgctaatgatatttgcgggcaagagccaccgttt
gggaattgtaacccgaacggtgataccgatgtggttgggaaatactattggaacaaagca
agacagaactgcgtctggttccattataagaactgtccgggcggtaacgtctttgacacg
gaggcggaatgtgacgatagatgtcgtccgcttgtcgcacctaccacaactagcatcgcc
acgaccacaacagtagcgccaaccacaacgacaatcaaaccaaccccaacccccacagtt
ccaactgcagcccctaccagcccttccggtatcgggtgctccaacgcgcgggttgacctc
gcttttgtgcttgacggaagcgcttcagtgggcgaagatggtttcgtccttctaagggag
ttcctcataaacgttgtcagtgctttcactaacatcggtaacgacggagtgcaggtcgct
atgattcagtacaatgataatccaaggatggaatttgacttcgagcaaactgtggataag
actagcgttctggacgccattgacggtcttgtatacatgggcggcaacactaagacggga
cttgctctgaccttcttacagagcgcatatgaagatgctagaccgcactctgataaggtt
gctgtggttgttactgacggaagaagtcaggatgacgtaataataccatcacaacagttg
aaacgagaaggaactacgatattcgccattggcgtgggtgaagccgagagaatggaactc
gtcgaaatggcgtctgtaccggttgacaaattcgtcttctcggtcgatgattacaccgac
atcgccagcattcaagaaaatttgattaaacagatctgcggcgttactcgtggagtgttt
agatccgcagcgggagtggatttcacgccagaggacgacaaactgattccagttgttacc
actacgtcgccaatattagaagaagaatacgatggatccggcgaacttgaatatgaatac
gaaggatcttcctaa
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