Ciona intestinalis (yellow sea squirt): 100178032
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Entry
100178032 CDS
T01056
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100178032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100178032
03019 Messenger RNA biogenesis [BR:
cin03019
]
100178032
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100178032
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100178032
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
Torus
zf_CCCH_4
zf-CCCH_3
zf-CCCH_2
zf-CCCH_12
zf-CCCH_4
zf-CCCH_DUS3L
zf-CCHC
zf-CCCH_RBM22
zf-CCHC_2
zf-C3H1
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
100178032
NCBI-ProteinID:
XP_002129809
Ensembl:
ENSCING00000021080
LinkDB
All DBs
Position
11:complement(394585..399158)
Genome browser
AA seq
286 aa
AA seq
DB search
MQEVVANLDHVKFDLEYAIDQQLGVQPLPFTGMDKSGAPVCHFFKLSICQRGANCPFRHV
LGDKAIVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARFGRCDNKDCQYQHIDPASK
IKDCPWYDRGFCKHGATCKHRHRRKIMCMNYLVGFCPEGGKCKFVHPLWELPVSEQKGTR
CHICNEYGHKANHCHRNLATKSENGGEMNGGLVLSFNKQSPSAMQPNVKKLVDEIFEQRS
RSQQQQIKIMPRGAPRDLSRITCFRCGQKGHYASRCAELFPNLPRP
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaagttgttgcgaacttggatcatgtaaaatttgatttggaatatgcgatcgac
caacaacttggagtccaaccgttgccgtttactggaatggacaaatccggggcaccagtt
tgtcatttcttcaagttaagtatttgccaacgtggagcaaattgtccgttccgacatgtg
cttggggataaagctatcgtttgtaagcattggttgcgaggtctgtgtaagaagggcgac
caatgtgagtttcttcatgaatacgacatgagcaaaatgcccgaatgttatttctatgct
cgattcggacgttgtgacaataaagattgtcaataccagcatattgatcctgcaagcaag
atcaaagactgtccatggtatgacaggggattctgcaaacatggagctacatgtaaacac
cgtcatcgtagaaagataatgtgcatgaattaccttgtggggttttgtcctgaaggagga
aaatgtaaatttgttcaccctctatgggaactcccagtgtctgaacagaaaggaacacga
tgtcacatttgtaatgaatacgggcacaaggctaatcattgccacagaaaccttgcaaca
aaatctgaaaacggtggggagatgaatggagggttagttctatcattcaataaacaatcc
ccatcagccatgcaacccaatgttaagaagttggttgatgagatatttgaacaacggagt
cgaagccaacaacagcagatcaagataatgccacgtggagcaccaagggaccttagtagg
ataacttgcttcaggtgcggacagaaaggtcattatgcgagtcgatgtgctgagttattc
cccaaccttccaagaccatga
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integrated database retrieval system
