Ciona intestinalis (yellow sea squirt): 100178056
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Entry
100178056 CDS
T01056
Name
(RefSeq) splicing factor 3B subunit 3 isoform X2
KO
K12830
splicing factor 3B subunit 3
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100178056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100178056
03041 Spliceosome [BR:
cin03041
]
100178056
03036 Chromosome and associated proteins [BR:
cin03036
]
100178056
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
100178056
Spliceosome [BR:
cin03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100178056
Complex B
100178056
Complex C
U2 SnRNP specific factors
100178056
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
100178056
TFTC complex
100178056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
100178056
NCBI-ProteinID:
XP_009862085
UniProt:
A0A1W3JPJ7
LinkDB
All DBs
Position
Unknown
AA seq
1216 aa
AA seq
DB search
MFLYGLTLQRATTIIHAVHGNFSGTKQQEIAVSRGKLLELLKPDPNTGKVHTLITVEVFG
EIRSLMSFRLTGGNKDYVVCGSDSGRISILEYIPNKNKFEKIHLETFGKSGCRRIVPGQY
LAIDPKGRAVMIGALEKQKLVYILNRDSQARLTISSPLEAHKANTFVYHMVGIDVGFENP
MFACLELDYEEADTDPTGEAVQNTQQTLTFYELDLGLNHVVRKYSEPLEERANHLISVPG
GNDGPGGVLVCAENYITYKNFGDQPDIRTPIPRRRNDLDDPERGMIVVCSATHKTKSMFF
FLIQTEQGDIFKVTLETDEDMVTEIRLKYFDTVPVSMAMCVLRTGFLFVAAEMGNHCLYQ
IAHLGDDDDETEFSSAMPLEEGDTFFYAPRALRNLVLVDELDSLSPIMTCLISDLANEDT
PQLYVTCGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVKIKEEEEFDSYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGENALVQVYPDGIRHIRADKRVNEWKTPG
KKTILRCAVNQRQVVIALTGGELVYFEMDQSGQLNEYTERKEMNSEVVCMDLSKVPPTEQ
RTRFLAVGLADNTVRIISLDPTDCLQPLSMQALPATPESVCIIEIGGGEDETGAQKASGG
LVLNIGLQNGVLLRTTLDNVTGDLSDTRTRYLGTRAVKLFRVLTQGSDAVLAMSSRTWLS
YQHQNRFHLTPLSYESLEFASGFASEQCPEGIVAISANTLRILALEKLGTVFNQASTGLQ
YTPRRFAIHYDSGNVIILETDHNAYTEETKENRKQQMAEEMIEAAGEDERELAAEMTAAF
LRESLPEDKFGASKAGPGMWSSQIRLMHPRSGETIQKICLEQNEAALSIAICKFPNNSDD
TFVLVGVACELLINPRQARGGGEIHTYKINEEGNKLELVHKTVVDEVPSAICPYQGRVLI
GVGKLLRIYDLGKKKLLRKCENKHIPNYIASIQAVGHRIIVCDVQESVHWVRYRRHENQL
VVFADDTYPRWVTSATVLDWNTVAVSDKFGNISVLRLPSDVNDDVQDDPSGTKALWTRGI
LNGAMQKCEVLCMYHVGETVLSLQKTTLIPGGSESLVYTTLSGSIGMLVPFTSHEDHDFF
QHLEMHMRNECPPLLGRDHLAYRSYYFPVKNVIDGDLCELFNSMEASKQKSVAEELDRVP
SEVSKKLEDIRTRYAF
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgtttttgtatgggctgactctgcaaagagctaccaccattattcatgcagtccatggc
aacttttcggggacaaaacagcaggaaattgccgtttccagagggaaactgctggagttg
ttgaagccagatccaaacacagggaaggtgcacacactcatcactgttgaggtgttcgga
gaaattcgttctttgatgtcgttccgcttgactggaggcaacaaagattacgttgtgtgc
ggttcagattctggaagaatttctatccttgaatatattccaaataaaaataaatttgaa
aagattcacttggagacttttggtaaaagtggatgcagaaggattgtacccggtcaatat
cttgctattgatcccaaaggaagagctgtaatgatcggtgctttggagaagcagaagttg
gtttacattttgaatcgagactcacaagcaaggttgaccatctcgtctccgctcgaagct
cataaagcaaacacattcgtctaccacatggtggggatagacgtggggttcgaaaatcca
atgtttgcttgtcttgaacttgattatgaagaagcagataccgacccaactggcgaagct
gttcaaaatacacaacagaccttaaccttctatgagcttgaccttggtttaaaccatgtg
gttcgaaaatacagcgagcccctggaagaacgagccaatcatcttatatcagtgcctggt
ggtaatgatggtcccggtggtgtgttagtgtgcgcagagaactatatcacatacaagaac
tttggtgaccaacctgatattagaacccctattccaagaagaaggaatgatcttgatgat
ccagagcgaggcatgattgtggtatgcagtgcaactcataaaacaaagtcgatgtttttc
tttttaattcaaactgaacaaggagatatatttaaggtgacccttgaaacagatgaagac
atggtgaccgagattcgacttaaatattttgacactgttcccgtttccatggcgatgtgt
gtgttgagaactggtttcttattcgtggctgctgagatgggaaatcattgtttataccaa
attgctcaccttggagatgacgatgatgagacggagttctcgagcgcgatgccgttagag
gaaggagacacattcttctacgctcctcgtgcgctgaggaaccttgtgctcgttgacgag
ctggacagcttgtcaccaatcatgacttgcctgatatcagatcttgcaaatgaagacacc
ccacagttgtatgtaacttgtggtagaggtccacgttcatctcttcgtgttttaaggcac
gggcttgaggtttccgagatggctgtttcagaactacctggtaatccgaatgctgtgtgg
actgtaaagataaaagaagaagaggaatttgattcttacatcatcgtgtccttcgtcaac
gctacccttgtcctctctatcggagaaactgttgaagaagttacagattctggattctta
ggaacaactcccactctatcttgctcattgctgggtgagaatgcattggttcaggtttac
ccggatggtattcggcacatccgagctgacaagcgagtcaatgaatggaaaactccgggt
aaaaaaaccatcctgaggtgtgctgtcaatcaaagacaagttgtcatcgcacttactggg
ggggaacttgtatattttgaaatggatcagtcaggacaactgaatgaatacacggaacgt
aaagagatgaacagcgaggttgtgtgcatggatttatcaaaagttcctccaacggaacaa
agaacgcgatttcttgctgtcgggttggctgataatactgtccgtattatatctcttgac
ccaactgattgtttgcaacctctgagcatgcaagctcttcctgcaactccggagtcggtt
tgcatcattgaaatcggaggaggagaggatgaaacaggagcacagaaagcatccggagga
ttggtcctcaacattgggttgcagaacggggttttgcttcgaacaacgcttgataatgtg
acaggagatctctcggacacacgaacacgatatcttggaacacgggcagtcaaactgttt
cgtgtattgacacagggttcagatgcagtattagcaatgtccagcagaacatggttaagt
tatcaacatcagaacaggttccatctcacaccactatcttatgaaagcttggagtttgca
tcaggattcgcatcagagcaatgtccagaaggaattgttgcaatatctgccaacaccctc
aggattttagcattggagaagttgggcaccgtgttcaaccaagcgtccacaggacttcaa
tacacgccacgtagatttgcaatacattacgactcgggtaatgtcattatacttgagacc
gatcataatgcttacacagaagaaaccaaggagaacagaaaacaacaaatggcagaagaa
atgatagaggcagcaggtgaggatgagagagaactcgctgctgagatgaccgcagctttc
ctccgtgagagtcttccggaggataagttcggagcatcaaaagctggtcctgggatgtgg
tcatctcagatccgtctcatgcatccaagatctggtgaaacaattcaaaaaatttgtctg
gagcaaaacgaagcagcgttgagcattgctatttgtaagtttcccaacaacagtgacgac
acgtttgtgttggttggcgtggcttgcgaactccttatcaacccacgacaagcaaggggg
ggaggggagatacatacttataaaataaatgaagaaggaaataaactggaactcgtgcat
aagacagtagttgacgaggtgccgagcgcaatttgtccgtatcaaggtcgtgtcctcatc
ggggttggaaagttgcttcgaatctatgatcttgggaagaagaagttgttgaggaagtgt
gagaataagcacatccctaactacatagccagcattcaagctgttggtcatcgtatcatt
gtgtgcgatgtacaggagtctgtgcattgggtgagatatcgaagacatgaaaaccaactt
gtggtgtttgcggacgatacttacccacgatgggtcacgtcagctactgtgttggattgg
aacacagtggctgtgtccgataagtttggaaatatatctgtgctgcgtcttccatctgat
gtcaacgatgacgttcaagatgatcccagcggaaccaaagctttgtggacgagaggaatt
cttaacggagcaatgcagaagtgtgaggtgctatgcatgtaccatgttggggaaacagtt
ctatcactacagaagaccaccctcatacctggaggttcagaatccctcgtatacaccaca
ttatcgggtagtattggtatgttggtgccattcacatcacatgaggatcatgatttcttc
cagcatttagaaatgcacatgagaaatgaatgtccaccattattggggagagaccatctt
gcttatagatcatattactttcctgtcaagaatgttattgatggtgatttgtgtgaactc
ttcaattcaatggaggcttcaaaacaaaaatctgtagctgaggaattagacagagtccca
tctgaggtgtcgaaaaaacttgaagacattcgtacaagatatgcgttctga
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integrated database retrieval system
