Ciona intestinalis (yellow sea squirt): 100178182
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Entry
100178182 CDS
T01056
Name
(RefSeq) zinc finger SWIM domain-containing protein 8
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cin04121
]
100178182
Ubiquitin system [BR:
cin04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
100178182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
100178182
NCBI-ProteinID:
XP_018670723
Ensembl:
ENSCING00000000089
LinkDB
All DBs
Position
Unknown
AA seq
1728 aa
AA seq
DB search
MENWDANVEVAEEGFSFEDSDRFDDESICSWMSETESFCTNWRGWRRQNCSLVVSNGNLS
NNGTVTSLMELCAQAVAIHIPFEQVEEVYKLVPENVQLRIAFWSFPDNEEDIRLYSCLAN
GSPDEFLRGEQLVRGKCVRNVLQIGFHLCANVVPPVNAVNKNPCSVAVMFDRRRITSCSC
NCGSSAKWCAHVVALCLIRIQQPLSVCMRAPVSESLSRLRRDQLQKFAQYLISELPQQIL
PTAQRLLDELLSSQSTVINRLSGAPDPTAGPSMSDKSLWFLDEHALNDNIKKALVKFCGP
TPIVYSDVNSLYLSSTEPPAAAEYSSLLRPLRGREPEGIWNLLSIVREMLKRRDSNAIPL
LDIVTDQCLAFEQVAVWWYNTRTSSSYLQSGSGSHSSSHRPSNNISSEIAQHAAASMCDE
IVALWRLVILDPGCKSSARKNELKARLLHFHDKTLEIIKRGKYKESHLLLFEGFKPAIAF
CDFDWDTISINLCSHIVHKKCQSKVVEPPNTINAPEEGLLTNDNLCGPGTPGKAFCKSLS
HQPTINKTVKCNKPHSSLQKQDNGSGSDDSCIERDFESLHISPVTLEESPLDFTSDDGSS
ACSPVQFTMSSEDDYENSTINNIPGLKSNMKLSIKKQNEATPTNNEASTSSKVSTQIEPP
SEEDNEMMKYRQELDAIFTRAESLYTHGRSREACELAVKLAEEILAQPDELIKEPQSLQN
NKKAWIKLSTSYACKSLERALFLCNVLLEHQRHHTLAFRVGLQGLELKRLPASSKALEVK
LFYQQGELANLMKRLPLGQREVLKLCEKANVLANIEATHDFQHVLPLMLTTFIFDAFCQT
VTSQSGRTASNSSRREITSNEQEVGFAAAVAALGFKINVSEAEHPLLCEGTRKQKGELAL
QMLLLYKDQRHKLRLIIDSLLDKTLSSNLRASSAFPSCSSATTRRTQTHTGASDGNLHND
FNNSPDQPGNSGYNVHRESPHISRADESTDDDDVRNLRHYDDALNLRGPHGDVKSSSCED
DYPSSSTVCSPPRRDSKLSWRSPTVRPKRKQHCLANVNSSASEEAMLSDTSPRLRRRNLS
NGVNQFSNPPGAVTGGSSWLTQRYPSSPSSDSGSSSSVESVGTSSNENKRVHEVPRIPQS
TRSPPRPVAPGSSSANNSKSLFNYRKNRGKNSTSVPDLPNQPSEAAAHFFFELAKNVLVK
AGGNSSTSLFMQQPQGNNQSGVHRNLVLAAFEIGLYALGLHNCVSPNWLSRTYSSHVSWI
TGQAMEIGSAALHILVDSWEGHLTPPETASLADRASRGRDSTTVRRAAELALSVLPHAHA
LNPNEIQRALLQCREQGAPMLEKACHAVEQAGRGGGVYPEVLFDVARQWEWIHRTVNEES
GNAGNEVARPATAPVSVNTTISSSSNTALPVVTMAPRTVAHTVSGQTIPVSVSGVVLPGG
GVITIQDPRIPPICHPAPIFHGFAPTIMDPQINGVSTGMPPLPHYAAVHLHPAPAINLVP
MPTSNLHALQYHPSRGPFLPDPHHHHQLHHQSNPQLPPIPGINLQSSPISTQLQSAFRVG
MLALDLLTKRTEDRPNNKYARNPPYASDVKWILKLSIKLGMQYVQQFCVTAVGGVSSPFV
LQDIALETAKYLSENNNQQVCANLRVPFLHPILSKCLQMYVHFIHNRLYHIHHTSDYDDF
VALVHTARGAFCMSPGGLLQFNEVLQSIRRSKACKNELWQKINTGLSL
NT seq
5187 nt
NT seq
+upstream
nt +downstream
nt
atggagaattgggatgccaatgtagaagtggcggaagagggattttcatttgaagacagc
gaccgatttgatgatgaatctatttgctcatggatgagcgaaactgaaagtttttgcacg
aattggagaggctggagaagacagaattgttcattggttgtttccaatggcaaccttagc
aacaatggcacagttacttccttgatggagttatgtgcacaagctgttgccattcatatt
ccattcgaacaagttgaagaggtttataaacttgtgccagagaatgttcaacttcgaatt
gctttctggagctttccagacaatgaagaagatataagattatattcatgtttggcaaat
ggcagtccagatgaatttctccgaggagaacaacttgttcgtggcaaatgtgtccgaaat
gttcttcaaattggttttcatctttgcgccaacgttgtcccacctgttaatgctgtcaac
aagaatccatgttccgtggccgtgatgtttgatagacgaagaataacttcatgtagttgc
aactgtggctctagtgctaagtggtgtgcacatgttgttgcactttgtcttattcggatt
caacagcctctatctgtttgcatgagagccccggtatcagaatcattgtcgagattacga
agagaccagctgcagaaatttgctcaatatctgatcagtgagcttccacagcagatactt
ccaactgcacaaagattgttggatgaattgttgtcttcacaatctactgtcattaataga
ttaagtggagcaccagacccaacagctggtcccagcatgtctgataaaagtctttggttt
ttggatgagcacgctctcaatgacaacattaaaaaggcactcgtcaagttctgtggtcct
accccgatagtgtacagtgatgttaattcactttatttatcatcaactgaaccaccagct
gcagctgaatattcaagtttactacgaccattgcgtggaagagaaccggaagggatttgg
aatttgttgagtattgttcgtgaaatgttaaaacgtcgtgattcaaacgccattccattg
ttggatattgtgactgaccaatgccttgcgtttgaacaggttgcagtgtggtggtacaat
acacgaacatcatcatcatatttacaaagtggatcaggttcacattcaagttcacaccga
ccttctaacaatatcagttcagagattgcccaacatgcagcagccagtatgtgtgacgag
atcgttgcattgtggagattggttattcttgatccgggctgcaaatcatctgctcggaaa
aatgaattgaaagcacgtcttctacattttcatgacaaaacactggaaattataaagcgg
ggaaaatacaaagaaagtcatcttctcttgtttgagggtttcaaaccagcaatagctttc
tgtgattttgattgggacactatatctattaatctatgttcacacattgtgcataagaag
tgtcagtctaaagtagtagagccacccaacacaataaatgcaccagaagagggccttcta
acaaacgataatttgtgtggtcctggcactcctggcaaagcattttgcaagtcactctcc
caccaaccaaccatcaacaaaaccgtaaaatgcaacaaaccccattcatcattacaaaaa
caagataatggaagtggtagtgatgattcttgtatagagagagattttgaaagtctgcac
ataagtcccgtaacattggaagagtctcctctcgactttacatcagatgatggatcatct
gcttgctctcctgtacagttcaccatgtcttctgaggatgattatgaaaacagcacaatt
aacaatattcctgggttaaaatccaacatgaaactatcaataaaaaaacaaaatgaagca
acacccacaaacaatgaagcttctacaagtagtaaagtttcaacacaaattgagccacca
agtgaagaagataacgaaatgatgaaataccgccaagaacttgatgctatttttacaagg
gcagaatcattatacacacatggtagatcaagagaggcgtgtgagcttgctgtgaagtta
gccgaagaaattcttgcacaaccagatgagttaatcaaggaaccacaatctctacaaaat
aataagaaagcttggatcaaactgagcacgtcttatgcttgtaaatcacttgagcgagct
ctgttcttgtgcaatgtcttactggaacaccagcgtcaccacacattggcttttcgtgtt
ggtttgcaaggtttggaacttaaacgtctcccagcaagcagcaaagcattagaggttaag
ttattttatcagcaaggagaattggcaaacttaatgaaacgattaccacttggtcaacgt
gaagttttaaaactttgtgagaaagcgaatgttctcgcaaatattgaggcaactcatgac
tttcaacatgttctcccactcatgctaacaactttcatattcgatgcattctgtcaaaca
gtaacttcacaaagtggccgcactgcttcgaacagttcaagacgagaaattacttcaaat
gagcaagaagttggttttgcagctgctgttgctgctcttgggttcaagatcaatgtgtct
gaagctgagcatccactgctatgtgaaggaacacgcaaacaaaagggtgaacttgcatta
caaatgcttcttctgtataaagatcagcgacacaaattaagattgattatcgacagttta
cttgacaagactctttcatcaaaccttcgtgcttcatcggctttcccgtcatgctcgagt
gcaaccactcgtcgcacacaaactcacacaggtgcctccgatggaaacttacacaatgac
ttcaataattcacctgatcaacctggaaacagtggatataatgttcatagagaaagtcct
cacataagtcgagcagatgaaagcacagatgatgatgatgtgagaaacttaagacattat
gatgatgctctaaatcttcgtggacctcatggtgatgtaaagtcctcgagttgcgaggat
gattatccatcttcatccaccgtgtgcagtcctcctcgaagagactccaagttatcatgg
aggtcgccaactgttcgtcccaagagaaaacaacattgtttggcgaatgtgaatagttct
gcatcggaggaagcaatgctgagtgacacatcaccacgtttacgacgtcggaatctcagt
aacggggtgaaccagttttccaacccacctggtgcagtgacaggtggttcgtcgtggctt
acacaaagatatccttcgagcccaagcagtgacagtggtagcagtagtagcgttgaatca
gtgggaactagttcaaacgagaacaagcgagttcatgaagtcccacgtatcccgcaatcc
acccggtccccaccaagacctgttgctccaggaagtagctctgctaataattcgaagtca
ttgttcaactacagaaagaaccgtggaaagaattcgacctcagttcccgatctacccaac
caaccatccgaggctgctgctcattttttctttgaacttgcaaagaatgttcttgtaaaa
gctggtgggaacagcagtacttcactattcatgcagcaaccacaaggtaacaatcaatct
ggagttcatagaaacctggtattggcagcatttgagattggattatatgctcttggcctt
cataactgtgtgtcacctaactggctcagtaggacttactcttcacatgtgtcttggatc
actggtcaagcaatggaaataggaagtgcagctcttcatatattggttgattcatgggag
ggtcatcttaccccacctgaaactgcatcacttgctgatcgtgcatcacgaggtagagac
agcactactgttcgtagagcagctgaacttgcccttagtgttctcccacacgctcatgct
ctcaatccgaatgaaatacagcgagctttacttcaatgcagagaacagggagctcccatg
ttagaaaaggcttgtcatgcagttgaacaagctggtagaggaggtggagtttatcctgaa
gtcttgtttgatgttgctagacagtgggaatggattcatagaactgtgaatgaagaaagt
ggaaatgctgggaatgaggttgctcgtccagccactgcaccagtcagtgtgaacacaaca
atctcatcatcatctaatacagcacttcccgttgttacgatggctccaaggacagttgca
cacactgtatctggtcaaaccattccagtatctgttagtggagttgtattacctggtggt
ggagttataactatacaggatccaagaatccccccaatttgtcacccggccccaatattc
catggttttgccccaaccattatggatccacaaattaatggagtgtctacaggcatgcca
cctttaccacactatgcagcagtgcatctacatcctgctccagctatcaacctggttccg
atgccaacttcaaatcttcatgctcttcaatatcatccaagtcgaggtccattcctccca
gacccgcatcatcatcatcaacttcatcatcagagcaatcctcaacttccaccaattccc
ggaataaatcttcagagctcgcctatctcgactcaattacaaagtgctttccgtgttgga
atgttggcacttgatcttctgacaaagagaacggaagatcgtccaaataataaatacgcg
aggaacccgccctatgcaagtgatgtgaagtggatactaaagctctcaatcaaattagga
atgcagtatgtgcagcagttctgtgtaactgcagttggtggtgtttcttctcccttcgtt
ctgcaagatattgcgctcgaaactgctaaatatctctctgaaaataataaccagcaggtg
tgtgctaatcttcgtgtaccatttcttcatccaatcctcagcaagtgtttacagatgtat
gttcatttcattcacaaccggttataccacatacatcatacaagtgattatgatgacttt
gtggcacttgtgcacactgcacgtggcgcattctgcatgtctcctggtggtcttctacaa
ttcaatgaggtattgcaaagtattcgaaggtcgaaagcttgcaaaaatgaactgtggcaa
aagattaatactggtctatctctttga
DBGET
integrated database retrieval system
