Ciona intestinalis (yellow sea squirt): 100178281
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Entry
100178281 CDS
T01056
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03013
Nucleocytoplasmic transport
cin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100178281
03015 mRNA surveillance pathway
100178281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100178281
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100178281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
100178281
NCBI-ProteinID:
XP_009861949
LinkDB
All DBs
Position
Unknown
AA seq
500 aa
AA seq
DB search
MPGIRRRRRDDNDVIVSEGESQSQALSASQSVHSDNDDFTELSSEYESGDEEVDQSDASV
PKSPSLKSVERGSGDGKEQSDIEQDGIAPPSDKDEPSFIPTKGVFYQHDVRSSRDSHSSR
GYKTKPDTTRWLHDKFNEAEQTPKTRAQLVEEYGYDIRSYKYGEAPNIKRNQRSNQEPKF
IHEKKFPRQRERNGNYEKGGRATNLIKTQDFHSKRRQFIKPETRTAQQMDRAEKPQPEPN
LSLTLNKSENSGKDGLTQVLDVINQRENKRPHNDKVDNLSNRMQNLTMKREFNQPRRYSS
LRQRTTESPRGEAPKSGHVTGANFSNPEHSTQSNLPMPAPDWLLERPGKTETPSGSYGGT
QNQAGLQLIDSNKLNQQYEAYQQWQQMNQFPNIAQQHAPLLPPMATEQTSFEGNPQQHID
LNQSRGTAGSMNFSANYQHNSYVQRLPDRALPLPPPQIPMLPGLLGQQVGGVTYYTPAPN
SPIGSPLRRPTAAIPIRHPM
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggatacgtaggcgtcgccgtgacgataatgatgtcattgtttcagaaggagag
tcacaatcgcaagcattgtccgcatcacaatcggtgcattcagacaatgatgactttacg
gaattgtcgtcggaatacgaaagcggcgatgaggaggtcgaccaatcagatgcgagcgtg
ccgaagtcaccaagtttaaaatcggtggagcgtggaagcggagacggaaaggaacaatcg
gatattgaacaagatggtatagctccacctagtgacaaagatgagccaagttttattcca
acgaaaggtgttttctatcaacacgatgttcggtcaagtagagacagccactcaagtcga
ggatacaaaaccaaaccagacaccactagatggctccacgacaagtttaacgaagcggaa
cagactccgaagacccgcgcgcaattggttgaagaatacggatacgatatccgttcgtat
aaatatggggaagcccccaatattaaaagaaaccaacgatcgaatcaagaaccaaaattc
atccatgagaaaaagtttccacggcaacgtgaacgaaatggaaattatgaaaaagggggt
cgtgcaactaatttgatcaagactcaagattttcattccaaacgaagacaatttattaaa
ccagaaacaaggacagctcaacaaatggaccgcgccgaaaaaccgcagccggaaccgaat
ttgagcttgactttgaacaaaagtgaaaattcggggaaagatggtttaacccaagtgtta
gatgttatcaaccaacgtgagaataagaggccccacaacgataaggtcgataatttatcg
aatcgaatgcaaaacctgacgatgaagcgagagttcaatcaaccgcgacgatactcgtcg
ctacgacaacgaacgacggagtcaccacgaggggaagcccctaaatcgggtcatgtgact
ggagcgaactttagtaaccccgaacattcaacccaaagtaacctcccgatgccggcgcct
gattggctgttggaacggccaggtaaaacggagacaccaagtggttcatatggcggaacg
caaaaccaggctggcttgcaattgattgacagcaacaaacttaaccagcaatacgaagct
taccaacaatggcagcaaatgaatcagtttccgaacattgcacaacaacatgcacctcta
ctgccaccaatggccacagaacagacgtcgtttgaggggaatccccaacaacatatagat
ttgaaccaaagccgaggaacagctggctcaatgaatttttcagcaaattatcaacacaac
agttatgtacaaagattgcccgatcgtgcactgccgctgccgccgcctcagataccgatg
ttaccagggttactgggccagcaggtgggaggggttacttattacaccccggcaccaaac
agcccgattggctctccactgagacgtccaacagcagccattcccatacgtcacccgatg
tga
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