KEGG T01056: 100178283

Ciona intestinalis (yellow sea squirt): 100178283

Entry

100178283         CDS       T01056

Name

(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC3-like

K03016

DNA-directed RNA polymerases I, II, and III subunit RPABC3

Organism

cin Ciona intestinalis (yellow sea squirt)

Pathway

cin03020

RNA polymerase

cin03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:cin00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100178283
  09124 Replication and repair
   03420 Nucleotide excision repair
    100178283
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cin03021]
    100178283
   03400 DNA repair and recombination proteins [BR:cin03400]
    100178283
Transcription machinery [BR:cin03021]
Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     100178283
  RNA polymerase III system
   RNA polymerase III
     100178283
  RNA polymerase I system
   RNA polymerase I
     100178283
DNA repair and recombination proteins [BR:cin03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      100178283

SSDB

Motif

Pfam:

RNA_pol_Rpb8 RNA_pol_RpbG

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

Ensembl:

UniProt:

LinkDB

Position

2:complement(4780747..4782189)

AA seq 152 aa
MATGLLFEDIFDIKDVDPEGKKFDRVSRLHCDSESFKMELILDINTQLYPVELGDKFRLV
LATTLSEDGTPADGEFNPLWEKNPTRADQFEYVMYGKVYRIEGEESVGDVASKLSAYVSF
GGLLMRLQGDANNLHGMTVDQNLYLLLKKLAF

NT seq 459 nt +upstreamnt +downstreamnt
atggcaacaggactactttttgaagatatattcgacattaaggatgtagatccagagggt
aagaagttcgaccgtgtttcacgtttacattgtgatagcgagtcgttcaaaatggaactc
attctcgacatcaacacacagctgtacccagttgagctaggtgacaagttccggcttgta
ctggcaactacactcagtgaagatggcactcctgctgatggagagttcaatcctctttgg
gagaaaaatccaaccagggccgaccagttcgaatacgtcatgtatggaaaggtttatcga
atagagggtgaagaaagtgttggagatgttgcttccaaattatccgcctacgtttcattt
ggcggtttactgatgcggcttcagggagatgcaaacaatttgcatggtatgacagttgac
caaaacttatatttgttgctaaagaaacttgcattttga

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