KEGG   Ciona intestinalis (yellow sea squirt): 100178403
Entry
100178403         CDS       T01056                                 
Name
(RefSeq) coatomer subunit beta'-like isoform X1
  KO
K17302  coatomer subunit beta'
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cin04131]
    100178403
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cin04147]
    100178403
Membrane trafficking [BR:cin04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    100178403
Exosome [BR:cin04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   100178403
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 EIF3I Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_HPS5 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st ANAPC4_WD40 PEP5_VPS11_N Beta-prop_DCAF4 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_SPT8 Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 DUF5739 HEAT_GCN1 MetallophosC
Other DBs
NCBI-GeneID: 100178403
NCBI-ProteinID: XP_002128845
Ensembl: ENSCING00000006169
LinkDB
Position
Unknown
AA seq 938 aa
MPLRLDIKRKLNARSDRVKCVDLHPSEPWMLVSLYNGNVHIWNHETQLLVKSFEVCDLPV
RATRFVPRKNWVITGSDDMQIRVFNYNTLERSHAFEAHTDYIRSIAVHPTQPYILTSSDD
MLIKLWDWDKKWSCAQVFEGHTHYVMQIVINPKDNNQFASASLDCSIKVWQLGSATPNFT
LTGHDKGVNCVDYYNGGDKPYLISGADDRLTKIWDYQNKTCVQTLEGHSQNIVCVSFHPE
LPIIMTGSEDGTVKIWHANTYRLETTLNYGMERVWCISAMKGSNNIALGYDEGSIMIKLG
REEPAMSMDSNGKIIWAKHSEIQQANLKAMTEQDLKDGERLQLAVKDMGSCEVYPQTLKH
NANGRFVVVCGDGEYIIYTAMALRNKAFGSALEFTWAQDSSEYAVRESGTSVKLFKNFKE
RKSFKPDFGAEGIYGGHLLGVRTSQGLAFYDWENLELIRRIEINPKNVIWSDNGDLVCIT
SDESFYILKYDQSKIEESKENTDLVTEDGITDAFSDDIGEIEEVVKTGLWVGDCFIYTNS
VNRLNYYVGGEIVTIAHLDRVLYLLGYIPSDNRLYLGDKELNVVSYSLLLSVLEYQTAVM
REDFETADKVLPSIPKEQRTRVAHFLEKQGFKPQAMAVTSDPEHKFELALGLGDLKVAYQ
LAQEAQAEQKWKQLAELATRKCEFGLAQECLRQAEDFGGLLLLATSAGNADMVKSLADGA
KAGGKNNVAFLSYFITGQTKQCLDLLINTNRLPEAAFFARTYLPSEMSRVVQLWKENLSS
TNKKAADSLADPEKYENLFPNLAESLVAEKFLNATEELRPASHYPVTPSNDDRDVLEEAA
GFESGNADKMVEEEDVVPEVSIPLIKDEDDGNTVKDEPCAGEEEEDETPDVETQEQQVPQ
APSSLDEYDDLELDIENLELDDDIDTSGVNLDDELLDD
NT seq 2817 nt   +upstreamnt  +downstreamnt
atgcctctgcgcttggatatcaagcgaaaacttaacgcaagatcggatcgtgtaaaatgt
gttgatttacatcctagtgaaccatggatgttggtatcactttataatggcaatgttcac
atatggaatcatgaaactcaacttttggtcaaatcatttgaagtatgtgaccttcctgta
agagcaacacgatttgttcctcggaaaaactgggtcatcactggatcggatgacatgcaa
atacgcgttttcaactacaacaccctggaacgttctcatgcgtttgaagctcacacagat
tacattcgatcaattgctgtccaccccacccaaccctacatattaaccagcagtgatgac
atgctgattaaactttgggattgggacaagaaatggagttgtgctcaagtatttgagggc
cacactcactacgtgatgcaaattgtcatcaatcccaaggataataatcaattcgcgagt
gcatcacttgactgcagtatcaaagtatggcaacttggttcagcaactccaaactttaca
ttaactggtcatgataaaggtgtcaactgcgtggattactacaatggtggtgacaaacct
taccttatttctggcgctgacgatcgcttaacaaaaatatgggattatcagaacaagaca
tgtgtgcagacattggagggtcactcacagaacatcgtgtgtgtaagcttccaccctgaa
cttcccatcatcatgactggttccgaggatggtactgttaagatttggcacgccaacaca
tatagactggaaaccacacttaactatggtatggagcgcgtgtggtgcatctctgctatg
aagggttcgaataacattgcgctcggttacgatgagggaagtatcatgattaaacttgga
cgggaagaacctgcaatgtccatggacagcaacgggaaaataatttgggccaaacattcc
gagattcaacaagcaaacttgaaggctatgactgaacaagacttgaaggatggagaacgt
ctccagcttgcagtgaaagacatgggaagttgtgaagtttatccacaaactttaaaacac
aacgcaaatggaaggtttgttgtagtgtgtggagatggagaatacatcatctacactgcg
atggctttgagaaacaaagcctttggttcggctcttgagtttacatgggcccaagattca
tctgaatatgcagtgagggaaagtggaacatccgtgaaacttttcaaaaactttaaggaa
cgaaaatctttcaaaccagattttggtgcagaaggaatatatggaggccatctacttgga
gttcgaacatcacaaggacttgcattttatgattgggagaaccttgaacttattagaaga
attgaaatcaaccctaaaaatgtgatttggtcggataacggtgacttggtttgtattaca
tccgatgaatcattttacatccttaagtatgatcaatctaagattgaagaatcaaaggag
aataccgacctggttactgaagatgggataactgatgcattcagcgatgatattggagaa
attgaagaagttgtgaagactggtttatgggttggcgattgtttcatatacaccaactct
gtcaacagattaaattattatgttggtggtgagatcgtcaccattgctcatttggatcgg
gtattatatctactcgggtatattccaagtgacaaccgactttacctcggtgataaagaa
cttaatgtggtgagttactctctgctgctgtcggtgcttgaataccaaactgcggtgatg
cgagaagattttgagactgctgataaagttcttccttctattccaaaagagcaaagaaca
agagttgcacattttcttgagaaacaaggatttaaaccgcaagcgatggctgtaacaagt
gacccagaacacaagtttgaattggctcttggtctgggtgatctcaaggtagcttaccaa
cttgcacaggaggcacaggctgagcaaaaatggaagcaacttgctgagctggctacacgg
aaatgtgagtttggacttgcacaggagtgcttacgtcaagcagaagacttcggtggtttg
cttttgcttgcgacatcagctggtaacgctgacatggttaagtcgttggcagatggagct
aaagcaggaggaaaaaataatgtggctttcctaagttactttattactggccaaactaag
cagtgtctcgatctgctgatcaacacaaacagacttcctgaagctgctttctttgctcga
acttatcttccaagtgaaatgagcagggttgttcaattatggaaagaaaatcttagttca
acaaataaaaaggcagctgattcactcgctgacccagaaaaatatgagaacttgtttcca
aacttggcagaaagtttagtggccgagaaatttcttaatgcaactgaggagttgagacct
gcttcccattaccctgtcacaccgtcaaatgatgaccgcgatgtacttgaagaggctgct
gggtttgaatcaggaaatgcagataaaatggttgaggaggaggacgttgttccggaggtt
tctattccactgataaaggatgaagatgacggaaatacagtcaaagatgagccttgtgct
ggtgaagaagaggaagatgagacaccagatgtggaaacacaagaacaacaggtgccacaa
gctccctccagcctggatgaatatgatgaccttgagctggacattgaaaatctggagtta
gacgatgatatagatacaagtggtgtgaatcttgatgatgaactcttggatgattaa

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