Ciona intestinalis (yellow sea squirt): 100178427
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Entry
100178427 CDS
T01056
Name
(RefSeq) general transcription factor 3C polypeptide 3
KO
K15201
general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100178427
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIC
100178427
TFIIIC, fungi type
100178427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_14
TPR_1
TPR_19
TPR_11
TPR_2
TPR_8
TPR_12
TPR_7
TPR_16
ANAPC3
TPR_CcmH_CycH
ARM_TT21
TPR_15
ARM_TT21_5th
ARM_TT21_2nd
TPR-S
FAT
HAT_Syf1_CNRKL1_C
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
100178427
NCBI-ProteinID:
XP_004226910
LinkDB
All DBs
Position
14:1842178..1857161
Genome browser
AA seq
1028 aa
AA seq
DB search
MWGSENSSDAHTVADSEKPSDANSNLSAVSSAFNIPSAQLEQFMAGNVTMETLAACQQVP
DHETAFQSHPMYETSSFTDVMTGSSSSTPIRPISLASHPQWSTSGVAEISNPFRSPPSQS
NSSLMELQTVTPSRIQHSPTKILSQRKTKPAADMSPSTSHSQSFVLHQDTSALSDIQMHT
YTSPIKNKPEPDSGQRFQIIIGGKRKETVNKDNTRNALTSSVSTFEKITDEAEAMEEGID
EKDDIDEEDRQNVQDIQRALNIEGDVLTEKRKQGASSRLPRELRGLMGEANLCYARGDHD
DAIKMCMEIIRLVPYAAEPFETLSMIYDERGEPERSLQYSLLAAHLSPRDADQWLHLANM
CLKQNENTKAINCYTKAFKVRPDDYNIVWENAKLHQKLGLFHKAMALYKIVVGLMPKSLS
VESVSLARDMAKTCHSNNESMLAVDLLEQALEHQASAFKDEDANMLCELLLLLGRYKNVL
EVLCLHSSLILYFSDETALEPKEKIGDRDIISMTLSSDLAIDLQCKVAVAMIRLNKSSLV
EEIASNICSHNPKDIGDLYFDMAEAYSDVGEHEEALKVLNLLVTSPDYSLAAVWLKHAEC
ERLCGNLERALKSYKQCVRLAPGHVEAHIKFAESLKLANKFSEANKTLEEADSYEADPDI
RMKLHLTRFQVLKEWGEKSRTNRLSKFSLAADVALLMFANRLGSAFSEGNIAVIKRKNTL
RNSAAGDVRLVKKTSFFWDSDKDSNVFLDGNPSIFTNEQWITLFKETAAILVRCQRYKDV
IRLGDGAQWLASWYDNAETRNLLERVVLSAGMIGGDYANAYNVVRQWLISGHETNHLWNI
FNQITARTGEIRHHRFCLRRLFKVPNHLALTVLNGNNWLASGSYKHALGEYERAHKMDPE
NPLYLLLLGVVYFHIASQKYSEHKHSLIVQGIAFLDKYRKLRNVDQESFYNMGRALHQIG
LESYAVLYYKRALAVPPPTVKQQSALGHQNIVPKFDLTCEIGYNLSLIYRKSGNTDLANS
TLATYCIV
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgtggggttctgaaaatagcagtgatgcacacactgtggctgattcagaaaagcccagt
gatgccaattcaaatctttcagctgtgtcttctgcatttaatattccctctgcccaatta
gagcagttcatggcaggaaatgtcaccatggaaacactggccgcttgccaacaagttccc
gaccatgaaacagccttccaatcacaccccatgtatgaaacatcaagcttcactgatgtg
atgacgggctcctcttcttcaactcccatccgaccgatctctctcgcctcccatccacag
tggagcacatcgggtgttgctgagataagcaatccgttcaggtctccaccttcacagagc
aattccagtttaatggaattacaaacagtaaccccatccagaattcaacattcaccaact
aaaattctatcgcaaagaaaaacaaagccagcagctgacatgagcccttctaccagtcac
agccagtcgtttgttttacatcaggacacctcagctttatcagacatacaaatgcatacg
tacacaagtccaataaaaaacaaacccgaacctgattcagggcagagatttcaaataatt
attggaggaaaacgaaaagaaacagtcaataaagataatacacggaatgctctcacttca
tctgtttctacctttgagaaaataacagatgaagctgaagctatggaagaaggtattgat
gagaaagatgacatagatgaggaagacagacagaatgtacaagacattcaacgtgcatta
aacatagagggtgacgttttaacagagaaaagaaagcagggtgcttcaagtcgtttgccc
cgtgagttgcgaggtttgatgggcgaggcaaatctttgctacgcacgtggcgaccatgat
gatgctatcaagatgtgtatggaaattatcaggctcgtcccatatgctgctgaaccgttt
gaaactctatctatgatttacgacgagagaggcgaacctgaacgatcgcttcaatacagt
ttattggccgcccatctctcacccagggatgcagaccagtggttacacctggcaaatatg
tgtttgaagcaaaatgaaaacacaaaagctattaactgttatactaaagcatttaaagta
agacctgatgattacaacattgtatgggaaaacgccaaacttcaccaaaagttaggtctt
ttccacaaagcaatggctttgtataagattgtggtcggcctcatgcccaagtccttatct
gtggagtctgtgtctcttgcaagggacatggcaaaaacttgccattcaaacaatgaaagc
atgcttgccgtcgatctgttagaacaagcacttgaacatcaggcttctgcttttaaagat
gaggatgctaacatgctgtgtgaactgctgctgttattgggaagatataaaaatgtcctt
gaggtcttatgtctgcacagcagcttgattttgtatttttctgatgaaactgctctggag
cctaaagaaaaaataggtgatcgtgatattattagtatgaccctatctagtgacctagcc
attgatcttcaatgcaaagttgccgtggcaatgatacggttaaacaaaagctctttggtt
gaagaaatagccagcaatatctgcagccacaaccccaaagatatcggtgacttgtacttt
gacatggcggaggcatactctgatgtaggagagcatgaagaggctctcaaagtcctcaat
cttctcgtaacctccccagattactctctcgctgctgtatggctaaaacacgcagaatgt
gagaggctatgcggcaacctggaaagggcactgaaaagttataagcagtgtgtacggtta
gcccctggtcacgtggaagcacatattaagtttgctgagtcgttaaaactcgccaataaa
ttctctgaagccaataagacattggaagaggcagacagctatgaagcggaccctgatatc
cggatgaaactgcatttaaccagattccaagttttgaaagaatggggcgagaagtcgcgt
acaaacagattatctaagttttcgttggctgcggacgtggctctgctgatgtttgcaaat
cgtcttggttcggctttttctgaaggaaatattgcagtaataaaaagaaagaatacattg
cgtaattcagcagcaggtgatgtgagactggtgaagaaaaccagctttttctgggattcc
gacaaagattccaacgttttcctggatggcaatccttctatttttaccaatgaacagtgg
ataacattattcaaagaaactgctgctattttggttcgatgccagagatacaaagatgtg
attagacttggtgatggtgcacagtggcttgcgtcttggtacgacaacgcagaaacgcgg
aatttgttggaacgtgtcgttttatccgctggtatgattggtggagattatgctaatgct
tataacgttgtaagacagtggttgatcagtggacatgaaacaaaccatttatggaacata
tttaaccagataactgctcgtactggcgagattagacaccacaggttttgtcttagaaga
ttatttaaggttcccaaccatcttgctctaactgtattaaacggtaacaattggcttgca
tcgggcagctacaagcatgcacttggtgaatacgaaagagctcataaaatggacccagaa
aatcctttatatctgcttctgcttggagttgtatattttcacatcgcttcacaaaagtat
tcggaacataaacactctctcattgtacaaggaattgcatttttagacaagtatcgcaag
ctacgaaacgtagaccaggaatctttctacaacatggggcgagcacttcatcagataggt
ttggaaagttacgcagttctctactacaaacgtgcattagctgtccctccccccactgta
aaacaacaaagtgctctcggacaccaaaatatcgttcccaaatttgacctaacttgcgag
ataggatacaatctttcactcatatacagaaaaagcggaaacacagatctagcaaacagc
actttagctacctattgcattgtatga
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