Ciona intestinalis (yellow sea squirt): 100178569
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Entry
100178569 CDS
T01056
Name
(RefSeq) ATP-dependent RNA helicase DDX19B
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03013
Nucleocytoplasmic transport
cin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100178569
03015 mRNA surveillance pathway
100178569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100178569
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100178569
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100178569
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
100178569
NCBI-ProteinID:
XP_002120760
UniProt:
F6XTY4
LinkDB
All DBs
Position
1
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AA seq
484 aa
AA seq
DB search
MTDENWAEAVDKQEQLSKKVDTLHINANSNLNKKNESLPQLVEPTVPVTDENYEKPLTHE
ESALLKKLLHDKLIQSNQELQVQQRDPTSPLFSAKSFEELNLKEELVQGIFAMGFNRPSK
IQETALPLLVCNPPQNMIAQSQSGTGKTAAFVLTMLSRINIENKYPQCVCLSPTYELALQ
TGKAVEQMGKYLKGLQVAYAIRGNQVQRNTNIPAQIVIGTPGTMLDWTRKRVFDLGKVEV
FVLDEADVMIDTQGFKDQSIRIQRQLSNKCQLLLFSATYDEQVMRFAEQIVHHPNIIKLR
RNEETLENIKQYYVKCSTIEKKYESIINLYGVLSVGQAIIFCHTRKTAAWLAKRMCEDKH
IVALLSGELDVSQRAAVLRRFKEAKERVLVTTNVCSRGIDVEQVTLVINFDLPVDYNRRP
DCETYLHRIGRTGRFGKTGVAINFVAHDQDMRILMEIQDHFGIKITNLDTGNHADMEEKL
GEED
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgacagacgaaaattgggctgaggctgtggacaagcaagaacaattatctaaaaaggtt
gatacactgcatataaatgccaacagtaatttaaacaagaaaaatgaatcgcttccccag
cttgtggaacctactgttccagtaactgatgaaaattatgaaaaaccattaacccatgaa
gaaagtgctcttctcaagaaacttcttcatgataagttgatacagagcaaccaggagcta
caagttcaacaacgagatcctacgtcaccactattctctgccaagtcatttgaagagctc
aacttaaaggaagaacttgttcagggaatctttgccatgggatttaataggccttcaaaa
atacaggaaacagctcttccattgcttgtatgtaacccaccacaaaacatgattgcacag
tcacagtctggaaccggcaaaactgcagcgttcgttctgaccatgctgagtagaataaat
attgaaaacaaatatccacaatgcgtgtgtctatcccccacatacgagcttgctttacaa
actggaaaagctgttgagcaaatgggaaaatatctaaaaggacttcaagttgcctatgct
attcgcggaaatcaagttcaacgaaataccaacattcctgctcagattgttattggaacc
ccgggaacaatgttagattggacaaggaagcgggtatttgatcttgggaaagttgaagtc
tttgttttggatgaagcagatgttatgatagatactcagggatttaaagatcaatccata
cgaatacaaaggcaactttctaataaatgtcagctgcttttgttcagtgctacttatgat
gaacaagttatgagatttgcagagcaaattgttcatcatcccaatattattaagctaaga
aggaatgaagaaactcttgaaaacatcaagcagtattatgtcaagtgcagcacaatagaa
aaaaaatacgagtccataattaatttgtatggtgtcttgtctgtggggcaagcaatcata
ttttgccatacaagaaaaacagctgcatggcttgctaaaagaatgtgcgaagataaacat
atcgttgcattgttgagtggagagctggatgtatcacaaagagcagctgttttaagacgg
tttaaggaggcaaaggagcgagttctggtgacaaccaatgtttgttctcgtggcattgat
gttgagcaggtgacacttgtcattaattttgacctgccagtggattataaccgacgacct
gattgtgaaacatatctacatcgtatcggtcgtactggtcgctttggaaaaactggcgtt
gcaataaactttgtagctcatgatcaggacatgagaattctaatggagattcaggatcac
tttggaataaagataacaaacctggacactggaaatcatgcagatatggaagagaagttg
ggagaagaggactga
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