Ciona intestinalis (yellow sea squirt): 100178608
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Entry
100178608 CDS
T01056
Name
(RefSeq) DNA-directed RNA polymerases I and III subunit RPAC1-like
KO
K03027
DNA-directed RNA polymerases I and III subunit RPAC1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100178608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100178608
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
100178608
RNA polymerase I system
RNA polymerase I
100178608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
Motif
Other DBs
NCBI-GeneID:
100178608
NCBI-ProteinID:
XP_002120101
Ensembl:
ENSCING00000003563
LinkDB
All DBs
Position
12:328965..330416
Genome browser
AA seq
345 aa
AA seq
DB search
MDIIKDIRSNIRLNEHGIANTHTTTYPRSYAGFNDAWDFQKFADNFCINVIELGPDSMQF
DMLGVDAAIANAFRRILIAEVPTMAIEKVYIYNNTTVIQDEVLAHRLGLIPLTADAKLFE
YRQGDDADGTPEDTLEFELNIKCTKNLSAPKDTTDLDVLYKHHKVYSKDIKWIPLGNQKD
LLTVKPVYDDILVAKLRPGHILDVKLHAVKGVGQDHAKFSPVATASYRLLPQIRLLDQIL
NSDAEDLQRCFAPGVIEVYRNKNGDQEARVVDARKDTCSREVLRHPHLKDRVELSKVRDH
FIYSIESSVAITPNELMCRAIKIMMGKCRTLLQELEKSEQDLDNA
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atggatattataaaagacataaggtcgaatattcgtctaaacgaacatggcattgcaaac
acacacacgacaacttatccacgatcttacgctggtttcaacgatgcatgggattttcaa
aaattcgccgacaatttttgcatcaatgtaatcgaactcggtccagattccatgcagttt
gacatgcttggtgttgatgcggcaatcgccaatgcgttccgtcgaatactgattgccgaa
gtcccaacaatggctattgagaaagtatatatttacaacaatacaacggtgatacaagat
gaagtgctcgcccataggttaggtcttataccactgactgcagacgcaaaactatttgaa
tatcggcaaggtgatgacgctgatgggacacctgaagacactctggaatttgaattgaat
ataaaatgcacgaaaaacttgtcagcgcccaaagatacaacagatttagatgtattgtat
aaacaccataaggtttattctaaagatattaaatggattcctctgggcaatcagaaggac
ttgcttacagtaaagccagtttatgatgatattcttgttgctaaattaaggccaggtcac
attcttgatgtaaaactacacgcagtaaaaggtgtgggccaagatcacgccaagttttca
ccggttgcgaccgcttcatatcgcctgctcccacaaatcagacttcttgatcaaatcctt
aactcagatgcggaagatctccaaagatgttttgctcccggagtgattgaggtttatcgg
aataaaaatggtgatcaagaagctagagtggttgatgctagaaaagatacttgcagtcgg
gaagtgttgagacatcctcacttaaaagatagagtagaactgagcaaagtacgcgatcat
ttcatttattcaattgaatcttctgtcgctattactccaaatgaactgatgtgccgagcc
attaaaatcatgatgggaaaatgtagaactctgctgcaagaacttgaaaagagtgaacag
gacttggataatgcataa
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