Ciona intestinalis (yellow sea squirt): 100178611
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Entry
100178611 CDS
T01056
Name
(RefSeq) NACHT domain- and WD repeat-containing protein 1
KO
K24734
NACHT domain- and WD repeat-containing protein
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cin04990
]
100178611
Domain-containing proteins not elsewhere classified [BR:
cin04990
]
Other domain-containing proteins
WD40 repeat (WDR) domain-containing proteins
100178611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_CAF1B_HIR1
DUF4062
ANAPC4_WD40
NACHT
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
NPHP3_N
Beta-prop_HPS5
Beta-prop_IFT122_1st
AAA_16
nSTAND1
Beta-prop_TEP1_C
ATPase_2
NPHP3
Beta-prop_Nup120_160
Beta-prop_ELP1_1st
AAA_22
Herpes_DNAp_acc
Motif
Other DBs
NCBI-GeneID:
100178611
NCBI-ProteinID:
XP_018671923
LinkDB
All DBs
Position
Unknown
AA seq
1624 aa
AA seq
DB search
MPKLLDDTKYTKDANEERIILIQGRKVNLNRLEQTNVVRIFVSSTFSDMRVERNTLLEKA
YPDLRSFCQKLGLDFQAMDMRWGIQDSAMIDHSICELCLDEIKTCKRLSIGPFFVAFLGN
RYGYRPVPSTISVQNFDKFEVIANEKGYTSSNLLTKWYQKDANAVPVHYVLQPITSEYPH
FNDDDVKYEKERNIQRQKWSDTSQQLADVIRKCASEARRRKLLVKIKGEHFFESVTELEI
KEGLFSSAGSATYLYEREISDLQHNISDTAARNFVDLSGNTENLLNNLKAEVTKLGQTKG
NSSLVKTYKVKWAAGKGITEKSKSHSAYLTKFCHDFVTDFKTAISQAVSNSGKQEEKAAE
KSDLLFDEVIHHAAFAQTKLKSFCGRSQLIETILSKLDGDTSSQPVVAFGESGRGKTALM
AKLVDSRRNMSSNESLVYRFLGTSPHSSNIHSVLQSITLQICELIPTPPPLYHELQNFTS
LVMKFNEVLDTASAVISRGDTQTHLGEKLIIFLDSLDQLSELDGAHRLNWLPKHLPPHVH
IILSTLPDLNLGILDTLHRTLPSSNFTEVTDLDRETGCEILNTWLKDSGRTLSQPQHDFV
MDAFVKSPQPLYLKLAFDEARLWKSYTDVSSLYLGKSAKEAISLFFKRLENTHGELFVAR
SIGYLVASRNGLGEAELNDLLSLDNEVLDCSYRHWSPPSHNVVRIPTLLWTRLRNDLGAD
IVERQSTGYTVLALYHRQFIEVARQRYLGSDVKEKVHQNIAEYFLGKWSDGKKKSLKLNI
WKNKEMKANRNVATQPLKFTAKIFNFRKLDELPFQLLSAGMWQELNDVVVSSADWLTHKI
EAFSIKEMLQDYDMILSKKPDTEITLIRNALKLAKPTLEFPGKVTNHVCSEIIGRLAYFT
KDFPRLVGKLVTESEQLLKRMNKMCLIPLCGSFPPPGGPLRTTLTGFSKSVTCMEVSCDA
SALFAGSRDGTIMIWELGVDEVLHTIHLHKDTVLCFATAGLRLASSSADNTLQVLNWDTG
SIVASMVEDHTEHTYHCNLALNDDGTVLVSACGKQINIWDVSSSSIQHSIKESNYLSCNI
LLCGQAVIAGYKNGAIMSWSLETGNTMYDTTTGNNGTKNENSGIFSVANFLIQDKLMSLF
NNGKVDLYNSSSGVLISSYDVDTNVEMSACAGGYVAFSCEKEIHVWKIEGQELKKTSVLQ
HHHDSVSTLNFNKTGDILVSGGRDHTLLCWTIGKDGITLADNMSGMGAPVDHVVLSGNIV
ASSSKNVFYVKLWNLNRTKVVKDPPSFPFQLGNHVISSCGKYICYFYEDLIIHDLELKSN
VKVMRAGKSEITCMKFTPDSCYIVCATVKGDLELVHCVDHQVMQTTSISNSSVSLLALSS
DGSQLLAVTGNGDMETLHFMKTEGFEPVMECLTCSIGIEDAVTAVSLSPENSGYITAFIG
VNSGIISVVSVHLAAGSSPKVTLQVILKEHKSKVTNLTLSSDRQMLFSGSEGATRRIWKF
KSGEWKLHQEMLFDSLLNTGVTCSAFISDSYVITGSQERSIKVWNTNTGELVASQYVYAT
VTDIVAVNDANIILTTDFGYIIQNYLLIPRVPVGDRPENSSLGNVAPSSQNKTLKIRSST
CAVV
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaacttttggacgacacaaaatacaccaaagatgctaatgaggaaagaattatt
ttgattcaaggtagaaaagttaacttgaacagactggaacaaacgaatgttgtgcgcata
tttgtcagttcaacattttctgacatgagggtcgaacgcaatactttgcttgaaaaagct
tacccagacctgcggagcttttgccaaaaacttggtctagatttccaggcaatggacatg
agatggggtatacaggattcagcaatgattgatcactcaatatgtgagctctgccttgat
gaaataaaaacctgcaagagattgtctattggaccattttttgtggcattcttggggaac
agatatggttaccggccagtgccttctactatttctgttcaaaactttgataaattcgag
gttattgctaatgagaaaggctacacatcctccaatcttctgactaaatggtaccaaaaa
gacgcaaatgctgttccagtacactatgttcttcagcctattacctcggaatatcctcat
tttaacgatgatgatgtaaagtatgagaaagaaagaaatattcagaggcagaaatggtcg
gatacatcacagcaacttgcggatgttattcgtaaatgtgcaagtgaagccaggagaaga
aaactgcttgttaaaatcaaaggagaacacttctttgaatctgtcacagaacttgaaata
aaggaaggtctcttctccagcgctgggtctgctacatatttatacgaaagagaaataagt
gacctgcaacacaatatctctgacacagctgctcgtaattttgttgatctgagtggaaat
acagaaaatctcttaaataacctgaaggctgaagtcaccaaacttggtcaaacaaaaggc
aattccagcttggtgaaaacctacaaagttaaatgggctgcaggaaagggcattaccgag
aagtctaaaagtcattctgcatatcttacaaaattttgtcatgattttgtcactgacttc
aaaactgctatttcacaagctgtatctaactcgggtaaacaagaagaaaaggcagcggaa
aaatctgacttacttttcgatgaagtgatacatcatgcagcttttgctcagacaaaacta
aagtctttttgtggaaggtcccaacttattgaaactattttgagcaagcttgatggtgat
acttccagccagccagttgtagcatttggtgaatcaggacgtggtaaaactgcactgatg
gcaaaactggtcgattcaagacgaaacatgtcttcaaatgaatccttggtttatcggttt
ttgggaacttctccacattcatcaaacatacacagtgttttacagtccattaccttgcaa
atatgcgagttaataccaacacctccacctctttaccatgagctgcaaaactttacgtca
cttgttatgaagtttaatgaagtcttggacactgcatctgctgtaataagcagaggagac
actcaaacacatctaggagaaaaacttattattttccttgattcattggaccagctgtca
gaacttgatggtgcacacagattgaactggttgcccaaacatctgccacctcatgttcac
atcatactttccacactacctgatcttaatcttggtatactggacaccttacatcgaaca
ctgcccagctctaacttcactgaagtgacagaccttgatagagagacagggtgtgagata
ttaaacacttggttgaaagattcgggaagaacactgtctcaaccacaacatgattttgtg
atggatgcttttgtgaaatctccacaaccactttatttaaagcttgcctttgatgaagca
aggttatggaaatcatatactgacgtatcttctctttatcttgggaagtcggcaaaggag
gcaatttctcttttctttaaacgacttgagaatacacacggagaactctttgtagcaagg
tccattggctatcttgtggcatccagaaatggtctgggtgaagcagagttaaatgatttg
ctttcactcgataatgaagtattagattgctcataccgacattggtccccaccatcgcat
aatgtggttcgtattccaacattgttgtggacaagactaagaaacgacttgggagctgat
attgtggaaagacagtcaactggttacactgtgcttgcactttatcatagacaatttata
gaagtagcaaggcaaagatatcttggtagtgatgtcaaagaaaaagttcatcaaaatatc
gcggagtactttcttgggaagtggtctgatggaaagaagaagtctttgaaattaaatatt
tggaaaaacaaagaaatgaaagccaacaggaatgttgcaacacagccgctaaaatttact
gcaaaaattttcaactttcggaaactggatgaactcccttttcaactcttaagcgccggc
atgtggcaagaattaaatgatgtggtagtctctagcgcagactggctaacacacaaaatc
gaagctttttcaatcaaagaaatgcttcaagattatgatatgatactttcaaagaaacca
gacactgaaatcacattgatcagaaatgctttaaaacttgctaagccaaccctggaattt
ccaggtaaagttacaaaccatgtatgtagtgaaataattggtaggttggcttacttcacc
aaagatttcccacgattagttgggaagctagtaacagagtccgaacagctcctgaagaga
atgaacaagatgtgtttgatccctttatgtggttcatttcccccacctggtggtccactg
cgtaccacactcacaggtttcagcaagtctgtcacatgcatggaagtttcatgtgatgca
tctgcattgtttgctggctcccgtgatgggacaatcatgatatgggaactaggtgtggat
gaagtattacacacaatacatctacataaggatacagtgctctgctttgccactgcaggt
ttaagattggcttcctcatccgctgataatacattgcaagtattgaattgggatacagga
agcattgtagcttccatggtggaggatcacacagaacatacctatcattgtaaccttgca
ttgaatgatgatggtacagtacttgtatctgcatgtggtaaacagatcaatatttgggat
gtgtcttcttcaagtatccagcactccataaaagaatcaaattatctctcatgtaatatt
ttactttgtggtcaagctgttatagcagggtataagaacggtgctattatgtcttggtct
ttagaaacagggaacactatgtatgacaccacgacaggtaataatggaacgaaaaatgaa
aattcaggcattttttctgtggcaaattttctgattcaagacaagttaatgtctttattc
aataatgggaaagttgatctttacaacagtagctcaggtgtcttgataagctcatatgat
gttgataccaatgtagagatgtccgcttgtgcaggaggttatgttgcattcagttgtgaa
aaagaaatacatgtttggaaaatagaaggacaggaattaaagaaaacaagtgtcttgcaa
caccatcatgattctgtatctacattgaatttcaataaaactggtgatatattggtatct
ggtggtagggatcatacactgctatgttggaccattggcaaggatgggatcacacttgct
gataacatgagtggcatgggagctcctgtagatcatgttgtgttgtctggaaacattgtg
gcaagctcatctaaaaatgttttctatgtgaaactttggaacctgaatcgcaccaaagta
gtaaaggatccaccatcctttccatttcaattaggaaatcatgtaattagtagttgtgga
aagtacatctgctatttttatgaggatctcattattcatgatcttgaattaaaaagcaat
gtaaaagtaatgagagctgggaagagtgagatcacatgcatgaagtttacaccagattct
tgctacatagtttgtgccacggttaaaggcgatttagagcttgttcattgtgttgaccat
caagtaatgcaaacaacatcaatctcaaattccagtgtttcccttttagcactgagtagt
gatggtagtcaactgcttgctgtaactgggaatggtgatatggaaacactgcattttatg
aaaacagaagggtttgaaccagttatggaatgtctcacctgtagtattggtatagaagat
gctgtcactgctgtttcactttccccagaaaactctggttacataactgcatttattgga
gtaaattcaggcataattagtgttgtttcagtgcatttagcagctggttcttctcccaaa
gtaactttacaagtcatattgaaagaacacaagagcaaagttacaaatttaactttgtca
agtgatcggcagatgctgttttcaggctctgaaggggctactaggcgaatatggaaattt
aagtctggagaatggaagttgcaccaagaaatgttatttgattccctactcaacactgga
gttacatgttctgcattcatatctgattcctatgtgattactggatcccaggaacggtca
attaaggtttggaacacaaacacaggtgaactagttgcttcacaatatgtgtacgctact
gtcaccgacattgttgcagtgaatgacgccaacattatcttaaccaccgactttggttat
atcatccaaaactatttgttgatacccagagtaccagtaggagacagacctgaaaacagc
agtttgggtaatgttgccccgtcttctcaaaacaaaactttgaaaataagatcgtctaca
tgcgcagttgtgtga
DBGET
integrated database retrieval system
