Ciona intestinalis (yellow sea squirt): 100178626
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Entry
100178626 CDS
T01056
Name
(RefSeq) ATP-dependent DNA helicase Q1
KO
K10899
ATP-dependent DNA helicase Q1 [EC:
5.6.2.4
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cin03400
]
100178626
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
100178626
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
100178626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
SecA_DEAD
RQC
BRE1
YabA
HAUS1
Fez1
Motif
Other DBs
NCBI-GeneID:
100178626
NCBI-ProteinID:
XP_018669737
Ensembl:
ENSCING00000021036
LinkDB
All DBs
Position
11:22637..29929
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AA seq
652 aa
AA seq
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MAALKDLDAELSQVTASLNKIQTELQALLHKQENLQERKSQLESEINRRRSCSSSKDEEV
TNWSSEDFPWSKSVRSILKSTFRMDDFRSKQLEAINATLSGRDVILIMSTGGGKSLTYQL
PALVGKGITVVISPLVSLMEDQIISLNRFGIEAKLLNAASTKDEVKHVHQSMTSQSPSFR
LLYVTPEKISKSKRFMAQLEKCYKSVNLNRIAIDEVHCASQWGNDFRPDYKILGILKRQF
PKSPIIGLTATSTDKVTEDTKKMLNIPFALVFKTALDRRNLFYQVREKPNTNDDVIKDIV
QLINSNFKNQPGIIYCFSRKNCAEVASSLNKRGIKSSEYHAQLTPDDKTKVHHMWSDNNI
QVICATIAFGMGIDKPNVRFVIHHSMSKSVENYYQESGRAGRDGSPALCLLYFGFTDVFK
QSTMVMTERTGLDNLNQMIKYCLDVKSCRRNLISTYFGEAWSSISCHEMCDTCSGMHKYK
NCDVTSACQSLISTIRLAESKGDGNRLTGSKVVEAAAGRGKNKSLDLKSFTASEIQRILL
HMLHMEYIREDFHFTPYSTISYLVPGPMATMLTNGLVTVMLDMPVSGGKTNDQVYTKALK
GTGKSLKPNICNGESSKLNKRKLNTDVSVKSETKFKVAKISAASETILIDSD
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggccgctctgaaagacttagacgctgagttgtcccaagtaacagcctctctcaacaaa
atacaaaccgagttgcaagcattgctgcacaagcaggaaaatctacaggaacgaaagtct
cagctcgaatcagaaatcaacagaagaagaagttgttcatcaagcaaagatgaagaagta
acaaattggagttcggaagatttcccatggagcaaatccgttcgttcaatcctcaaatct
actttccgcatggatgactttcgttcgaagcaactagaagcgattaatgcaacgttgagt
ggtcgcgatgtcatcctcattatgtccactggaggagggaagagtctcacttatcaactt
cctgctcttgtgggaaaaggtatcactgtagttatctcaccacttgtgtctttaatggaa
gaccaaataataagtttaaataggtttgggatcgaagcaaagttgttgaacgctgcttca
accaaggatgaagtaaagcatgtccaccagtctatgacatcacaatcaccatcttttcgt
ctcctttacgttacacctgaaaaaatatcaaaaagtaaaagatttatggcacagcttgag
aaatgttataagtccgtgaatttgaatcgaattgcgattgatgaagttcactgtgcaagt
cagtggggaaatgatttccgaccagattacaaaatccttggaattctgaaacgccagttt
cctaaatccccgataattggactaactgctacatctacagataaggtgacagaagacacc
aagaaaatgttaaacatcccgtttgcgctcgtctttaaaaccgcgttggatcgtcgcaac
ttgttttatcaagttcgtgaaaagccaaataccaatgatgatgtcataaaggatattgtt
caacttataaacagcaactttaagaaccaaccaggtataatctactgcttctcacgtaag
aattgcgccgaagttgcttctagtttaaacaaacgaggaatcaagtcatcggaataccac
gcacaactaacaccagatgacaagacaaaggttcaccatatgtggagtgataacaatata
caggtgatttgcgccaccattgcgtttgggatgggcatcgataaaccaaacgttcgcttt
gttattcatcattcaatgagtaaaagtgtggaaaactattatcaggaatccggcagggca
ggcagagatggttcacctgctttgtgtcttttatacttcgggttcaccgatgttttcaaa
caaagcacaatggtaatgacggaacgaacaggactagacaatctgaatcaaatgattaag
tattgtttggatgtaaaaagttgtcgtcgcaacttaatatcgacatactttggtgaagct
tggtcctctataagctgccatgagatgtgcgacacatgctctggaatgcacaagtataag
aactgtgatgtcacaagtgcttgccaatccctcatatctacaatccgattggccgagagc
aagggtgatggaaacaggttaacgggttcaaaggtcgtggaggcagcagctgggaggggg
aagaataaaagtttggatttaaaaagttttacggcgtctgaaatacaaagaatcctgctg
catatgttacatatggaatatataagagaggattttcacttcacaccttactcaactatc
agctaccttgtgcctgggccaatggcaaccatgttaactaatggccttgttactgtaatg
ctggatatgccagtcagtggtgggaaaactaacgaccaagtttataccaaagcattaaaa
ggaactgggaagtcactaaagccaaatatatgtaatggagaaagctccaaattaaacaaa
cgtaaacttaatactgatgtttcagtaaaatcagaaactaaatttaaagtcgccaaaatt
tctgcagcatcagaaacaatattaatagacagtgactag
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