Ciona intestinalis (yellow sea squirt): 100178745
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Entry
100178745 CDS
T01056
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1
KO
K05038
solute carrier family 6 (neurotransmitter transporter, glycine) member 5/9
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
100178745
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cin02000
]
100178745
Transporters [BR:
cin02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
100178745
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Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
100178745
NCBI-ProteinID:
XP_009859590
Ensembl:
ENSCING00000005474
LinkDB
All DBs
Position
9:complement(2033713..2044548)
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AA seq
666 aa
AA seq
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MSTEMKKSELSDDPVVTSLIDEKKPAAKGEVERETWDKKLDFMLSCIGYAVGLGNIWRFP
YLCYKNGGGAFLIPYLIFLLICGIPLFFLELSFGQFGALGPVAIWKIAPIFKGVGFCMMI
ISFMVCVYYNVIIAYSLHFIFNSFTSTLPWSTCGNDWNTEFCRTNYSSNTTMPPVWTGID
CGKGKGWFEDIMNTSVNYTQLNNVSYMGHKSWTESIDVNGSCIQFNTSSQEYFSRKVLRL
TDSIATLGGIQWELLGFLALAWVIVFMCLFKGVKWSGKVVYFTATFPYVVLVILLIRGVM
EEGAMDGIHYYLTPNITRLQDVKVWSDAAVQIFYSLGAAWGVLLSYSSLNKFNNNVYRDA
VSICFVNCCTSFLAGFVVFSVLGALAFQTGRDIEDVVDQGAGLAFVAYPAAVANLPIAPL
WAFLFFFMLLNLGLDSQFGMIEAVVSGLLDEVSWFRKNRVKFLAGLCFVQFLLAIPMVTE
SGMYWVTLIDWYASGFPLMCAAVCEIICIAWVYGVDRFLYDIRCMIGHKPFLWPWWKATW
SCITPICIFLIMTAHLAFYSPVEYNKIVYPSWAEVVGWLSASASILMIPGWAIYQLNYHP
RAKGSLPERLAAISRCDADWGPRDPMIPYKYRKQAEPLKSRVHCCSSTESCASDLSDPPV
YKVNSV
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacagaaatgaagaaatcggagttatcagacgaccctgtcgtaacaagtctgata
gatgagaagaaacctgctgctaagggcgaagtcgaacgagagacctgggataagaaactt
gattttatgttatcttgtatcggttatgcggtaggactgggaaacatatggcgatttcct
tatctctgctacaagaatgggggaggagcatttctcattccatacctcatctttttatta
atttgtggaatccctctgtttttccttgaactgtctttcgggcagtttggagctttgggt
ccagttgccatatggaagatagctcctatatttaaaggagtcggattctgcatgatgatc
atatcgttcatggtatgcgtttattacaacgttattatagcctacagtttacatttcatt
ttcaactcattcacgtcaactttaccatggtcgacgtgtgggaacgattggaatacagag
ttctgccgaaccaactacagttcaaataccactatgcctcccgtatggactggtattgat
tgcggaaaaggcaaaggatggttcgaagatataatgaacacgtctgtcaattatactcag
ttaaacaacgtttcctatatgggccataaaagctggacagagagcatagatgtaaacggt
tcttgcatccaatttaacacttcgtcccaggaatatttctcacgaaaagttctccgtttg
accgacagcattgctacattgggtggaatacagtgggagttgttaggattccttgccctt
gcatgggtcatcgtgtttatgtgtttgtttaaaggagtcaaatggtcaggcaaggttgtt
tatttcactgccacttttccgtacgttgttttggtgattctattgatccgtggtgttatg
gaggaaggtgctatggatggaatacattattatctaacacctaatattacgcgattgcag
gacgtgaaggtatggtccgatgcggctgttcagatcttttattcgctgggtgcagcgtgg
ggcgtcctgctttcttattcctcgcttaataagtttaataacaacgtttacagagacgcg
gtgtccatatgttttgtaaattgttgtacgagtttccttgccgggtttgttgtgttctca
gtcctcggggcgctggcatttcagactggtagagatattgaagacgttgttgatcaagga
gccggacttgcttttgttgcctaccctgctgccgttgccaatctaccaattgccccatta
tgggcgttcctatttttcttcatgcttttaaatcttggtttggacagccagtttggaatg
atcgaagctgtggtgtctggacttcttgacgaagtatcttggtttcgaaaaaatcgtgtc
aaattccttgccggcctttgctttgtacaattcctactagcaataccgatggttacagag
agtgggatgtattgggttacattgatcgattggtacgcgtccggtttcccgttaatgtgc
gctgctgtgtgcgagatcatatgtattgcctgggtttacggcgttgatcgtttcttgtac
gacatccgttgcatgattggacacaagccgttcttatggccctggtggaaagctacatgg
agctgtattactcccatctgcatatttttgatcatgactgctcatcttgctttctattca
cccgtcgaatataacaagattgtttatcccagctgggctgaggttgtgggctggctttct
gcttcggcttcaattcttatgattcctggatgggcgatttaccaactaaattaccaccca
agagctaagggttctttgccagagaggctggctgctatttctcgctgtgacgcggattgg
gggccccgagatcccatgatcccatacaaatacaggaaacaagcggagcctcttaaaagc
cgagtgcattgttgtagttcaacagaaagttgcgcttcggatttatcagaccctcctgtt
tacaaagtaaattcagtttaa
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