KEGG   Ciona intestinalis (yellow sea squirt): 100178920
Entry
100178920         CDS       T01056                                 
Name
(RefSeq) DDB1- and CUL4-associated factor 5 isoform X1
  KO
K11800  DDB1- and CUL4-associated factor 5
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cin04121]
    100178920
Ubiquitin system [BR:cin04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     100178920
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EIPR1 WDR55 Beta-prop_RIG_2nd EIF3I Beta-prop_EML Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_Vps41 WD40_like WD_LRWD1 PAN2_N DUF4114 DUF6987
Other DBs
NCBI-GeneID: 100178920
NCBI-ProteinID: XP_026690017
Ensembl: ENSCING00000020344
LinkDB
Position
4:1756545..1760539
AA seq 714 aa
MTTARTNKSHNIYAYCKLLQNTGSDNLAHTLRQKRFQSCKNLYKRDLIVHFGCVNALEFS
KKNKEYLASGGDDKRVLLWNVGETLMNPNYKPTAMETLHISNIFCLDFTADNQYLLSSGN
DEQVIVHDIETRQESCAYMKEKSIFAISAHPELPTLFLTASEDGKVSLTDMRMSNTNCMA
DYSSALHGVMFNPTEPMLFASANSNEGAALWDIRKPKTALLRYGFPFYKERTMSVHFNKT
GSLLSVLRRKRPVRIYRTHSVMPVCDFKATGYLNSCTMKSNCFAGENDEYVVSGSDDFQV
YLWKIPEEIDQKKFLVEEEPSMVLKGHRSIVNQVRYNPNAQVLVSSGVEKSIKLWTSFRA
PQSNGCIGRASDDVVRSLYTRNEYLRLVLQTGSPLAHDYAFEDTVEDPRMMAFFDSLLQH
DMDLDLASESSDDSIDDAMQEIVQELDSPIILSDNEGEIDYLGVQAKICRLFIQAKTETP
ISTWKNIPHLKKLLGICKRMADVEIPLVELQQFLKSYEEERSKVESNCEAGPSNEQALKA
TTTENLTEMGVSSNIQGTPDKQEHCVKFQKVSNHCKKRNASSWKWKQRTLSSDEDSAGSD
FDSKSNLRQINAQRKHKVKKWNPDSETSETSSKSKNSYQEIPHENTALDRLSNCTAHKDQ
PSNSNSAYQRSAEKLNRSIEATNNRIASVAEAMAQALEDSENDKDNNYNDQSVS
NT seq 2145 nt   +upstreamnt  +downstreamnt
atgacaacagcgagaacaaacaaatcacacaacatttacgcatattgcaagttgctgcaa
aacactggatcagataacttggcacacacattaaggcaaaaaagatttcagagctgcaaa
aacctttacaaacgggatttaattgtacattttggttgtgtaaatgcgttagaattttcc
aagaaaaacaaggaatatcttgcttctggaggggatgataaaagagtgttgctatggaat
gttggggagactttaatgaacccaaactacaaaccaactgcaatggaaactcttcatata
tccaatatattttgtctggattttacagctgacaatcaataccttctttcatcaggtaac
gatgagcaagttattgttcatgacatcgaaacaagacaagaaagttgtgcttacatgaaa
gaaaaatcaatatttgcaatctcggcacacccagaacttcccactttgtttcttacagct
tctgaagatggaaaagtttcattgactgatatgagaatgtcaaacacaaattgcatggca
gattattcttctgcattacatggagtgatgtttaatccaactgagccaatgctgtttgct
tctgcaaattccaatgaaggtgctgcgctatgggacatcaggaaaccaaaaacggcgtta
cttcgatatggtttcccattttacaaagagagaaccatgagtgttcacttcaacaagacg
gggtccttgctgtctgtgctcagacgaaagcgtcctgttagaatatacagaactcacagc
gtgatgccagtatgcgacttcaaagcaacagggtacttgaattcctgcacaatgaaaagc
aactgttttgctggggaaaatgatgagtacgttgtgtcaggatctgatgacttccaagtt
tacctgtggaaaattccagaagaaattgaccagaaaaagttcttggtagaagaagagccc
agcatggttttaaaaggtcacaggtccatagttaatcaggtgaggtacaacccaaatgct
caagttcttgtttcatctggtgtagaaaaatcaatcaaactctggacatcatttcgtgct
ccacaaagtaacggatgtataggaagagcatctgatgatgttgtcagatctttgtacacc
agaaatgagtatcttcgcctggtcttacaaactggttctccattggcgcatgactatgca
tttgaagacacagtggaagatccacgaatgatggctttctttgatagtttgctacagcat
gacatggatttagatttagcaagcgaatcttccgacgatagcattgatgatgccatgcaa
gaaattgttcaggagctagacagtcctatcattctcagtgacaatgaaggggagatcgat
tatttgggtgttcaagcaaaaatctgccgcttatttattcaagcgaaaacagaaacacca
atatcaacttggaaaaatatacctcacctgaagaagttgcttggaatatgcaaacggatg
gctgatgttgaaataccacttgtagaactgcagcagttcctaaagtcatacgaagaagaa
agatctaaagtggaaagcaattgtgaagctggtccctctaatgaacaagctttgaaagcg
acaactacagaaaacttaacagaaatgggagtctcctctaacatccagggtacacctgat
aagcaagagcactgtgtcaaatttcaaaaagtttcaaatcattgcaaaaaaaggaacgca
agtagctggaaatggaaacaaagaacactatcatcagatgaagattcagctggtagtgac
tttgacagcaagtctaatttgcgtcaaataaacgctcaaaggaaacataaagtaaaaaaa
tggaaccctgattctgaaacatcagaaacctcttctaaaagcaagaactcttatcaggaa
attccacatgaaaatactgcacttgacaggttaagcaattgtactgctcataaagaccaa
cctagtaattccaattcagcatatcagcgctcagctgaaaaactcaatcgttctattgaa
gcaacaaacaacagaattgcctctgtagccgaggcaatggcacaagcattagaagacagt
gaaaatgacaaagacaacaattataatgatcagagtgtttcatga

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