Ciona intestinalis (yellow sea squirt): 100178968
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Entry
100178968 CDS
T01056
Name
(RefSeq) DNA polymerase delta catalytic subunit isoform X2
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03030
DNA replication
cin03410
Base excision repair
cin03420
Nucleotide excision repair
cin03430
Mismatch repair
cin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100178968
03410 Base excision repair
100178968
03420 Nucleotide excision repair
100178968
03430 Mismatch repair
100178968
03440 Homologous recombination
100178968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cin03032
]
100178968
03400 DNA repair and recombination proteins [BR:
cin03400
]
100178968
Enzymes [BR:
cin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
100178968
DNA replication proteins [BR:
cin03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
100178968
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
100178968
MMR (mismatch excision repair)
DNA polymerase delta complex
100178968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
DNA_pol_B_2
REV3_N
DNA_pol_B_exo2
Motif
Other DBs
NCBI-GeneID:
100178968
NCBI-ProteinID:
XP_002125320
Ensembl:
ENSCING00000002813
UniProt:
F6WCR1
LinkDB
All DBs
Position
14:complement(2407036..2422398)
Genome browser
AA seq
1064 aa
AA seq
DB search
MEKRKQLIKSEEIGNKRLCLDADKDNIELLQALPASVLSEWQRPPLPKIDPNNDPIIFQQ
LDLEHYTDDKEYPGMPPPQGGTAPIIRMYGVTTEGHSILCHFHGFLPYFYVKAMPGFKDE
HCEEFQNCLNEIVLKEMRGNKDVTKAVYKVECCMRQNMYGYHSGGKSKFLKITVAVQRLV
ATTKRMLEGGFHTPTYPDHAYSVFESFIDFEIRFMTDTNLTGCNWVELNPGKYKIRKEMT
TSAQLEVDVVWDQFTSHPPDGEWQKIAPIRILSFDIECAGRKGIFPVPNIDSVIQIASMV
KCQGSHEEPFIKTIFTLNSCSTIVGARVFSFKTEEGLLQAFSDFVRAVDPDVISGYNIQN
FDLPYLINRAAHLKVANFPFLGRIKKSVTKIKETKFQSKQMGSREMKQINMEGRVQFDVF
VALLREQKLRSYTLNAVSFHFLGEQKEDVHHSIITELQHGNAQSRRRLAVYCLKDALLPI
RLLDKLMFIINYMEMARVTGVPLSYLLTRGQSIKVISQLLRKTKEADLLMPVIPTSNDDE
FTGATVIDPIKGYYNQPITTLDFSSLYPSIMQAHNLCYTTLLRKNSKEKDLLGPEDFIKT
PSGDYFVKASVRKGLLPGILESLLTARTNAKALMKVEKDPFKRSVLDGRQLALKISCNSV
YGFTGAQIGKLPCLEISGSVTAFGRMMIEQTKQHVETQYTVENGYSHDAKVIYGDTDSVM
VKFGVSTVAESMVLGKEAASFVSDKFVKPIKLEFEKVYYPYLLINKKRYAGLYFSSSSEV
HDKIDCKGIETVRRDNAPLTANLISTCLEKLLVGRDPDGAVAHAKEVISDLLCNRIDISQ
LIITKELTKTKEEYAAKQAHVELAERMKKRDAGSAPQLGDRVPFVIVCGAKGQAAYLKSE
DPIYVLENNLQIDTEHYLKHQLTQPLLRVFEPVLGEAKAQSVLLKGDHTRVKKVVSSKVG
GLMAFAKKRVTCIGCKAVLPKDGAVCVHCESRESQIYQKEIAKLSSLEEKFSRLWTQCQR
CQGSLHEEVICTSRDCPIFYMRKKVRIDLESQSSVLRRFGCPAW
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagcgaaaacaattaattaaatcggaagaaattggaaataaaaggctctgttta
gatgcagataaagataatattgagctgctacaggcgctacctgcttctgtattatctgaa
tggcagcgtccaccccttcccaagattgacccgaacaatgaccccattattttccaacaa
ttggatttagaacattatacagatgataaagaatatcctggcatgcctcccccacaagga
ggtactgcacccattataagaatgtatggagttacaacggagggtcatagtatattgtgt
cactttcatgggtttcttccgtacttctatgtcaaggctatgcctggatttaaggatgaa
cattgtgaagaatttcagaattgtttaaatgagattgtcttaaaagagatgagaggaaat
aaagatgtaaccaaagctgtgtataaagttgaatgctgtatgagacaaaacatgtatggt
taccacagtggtggcaaaagtaagtttctgaagatcacggttgccgttcaacgtcttgtt
gcaaccaccaagcgaatgttagagggtggtttccacacgccaacatatcctgaccatgcg
tattctgtctttgaaagttttattgactttgagatcaggtttatgactgataccaaccta
actggatgtaattgggttgaattgaatcctggaaaatacaagatcaggaaagagatgaca
acatccgctcagctggaggttgatgttgtttgggatcagtttacgagtcatcctcctgat
ggggagtggcagaagatcgctcctatcaggatcttaagcttcgatattgagtgtgccggc
cgcaaaggtatttttcctgtccctaatattgactcagtgatacaaattgcatccatggtg
aaatgccaaggttcccacgaggaaccattcataaaaaccatctttactctaaactcatgt
tcaactattgttggagcaagagtcttctcatttaaaactgaggaaggcttactacaggct
ttcagcgactttgttcgggcggtggatcctgatgttataagcggatacaatattcagaac
tttgatcttccatatttaataaacagagctgcacatcttaaagtggcaaactttcctttt
cttggaagaataaaaaaatctgtgacaaaaatcaaagagaccaaatttcaatcgaaacag
atgggaagtcgtgaaatgaaacaaatcaatatggaaggaagggttcagttcgatgttttt
gtggcgttactacgagaacaaaagttacgatcatacacgttaaacgccgtcagttttcat
tttctcggcgaacaaaaagaagatgtacatcactctattatcactgaactacaacatggg
aatgctcaatctcgaagaagactggcagtttattgtttgaaagatgcccttcttcctatt
cgtctcctcgacaaactcatgttcatcattaactacatggagatggctcgtgtcacaggg
gtccctttgtcatatctacttactagagggcaaagtatcaaagttatttcgcaacttctt
agaaagacaaaggaagcagatttattaatgccggtgataccaacaagcaatgatgatgaa
ttcactggtgctactgttattgacccaataaagggttactacaaccaaccaatcacaacc
cttgatttctcgtccttatatccttctattatgcaagctcataacttatgttacacaact
ttattgagaaagaatagcaaagaaaaagatcttctaggtcccgaagatttcattaaaaca
ccatcaggcgattactttgtgaaagcaagtgtaagaaaggggttgttgcctggaatcctg
gaaagtttgttgactgctagaacgaatgccaaagcattgatgaaagttgaaaaagatcct
ttcaagagaagcgtattagatggtaggcaacttgcattgaagataagttgtaactcagtt
tatggatttactggagctcagattggaaaactaccttgtttagaaatatcggggagtgta
actgccttcggccgtatgatgattgaacaaaccaaacaacatgttgaaactcaatacaca
gtggagaatggttattcgcatgatgctaaagttatttatggagacactgactcagtaatg
gtgaagttcggcgtgtctactgtggctgaaagtatggtgttggggaaagaagctgcctca
ttcgtatctgacaaatttgttaaaccaataaagcttgaatttgaaaaggtctactatcca
tacctactgatcaacaagaagcgatatgcaggtctctacttctcgtcaagttctgaagtc
catgataaaattgactgcaaaggaattgaaactgttcgaagagataatgctcctttgaca
gctaacctgatatccacctgcttggaaaagttgttagttggcagggaccctgatggtgca
gtggcgcatgcaaaggaggttatatcagatttgttgtgcaacagaatcgatatttcccaa
cttataataactaaggaacttacaaaaactaaggaggaatatgcagcaaaacaggctcac
gttgaactggcggaaagaatgaagaaacgtgacgcaggtagcgccccccagctgggagat
cgtgttccgttcgtgatcgtttgcggcgctaaagggcaagcagcgtatctcaaatccgag
gacccgatatatgtcctggagaacaatctacaaattgacaccgaacattatttaaaacat
caacttacacaacctttactgcgtgtgtttgaacctgttctcggggaagcaaaagcacaa
tctgtgttattaaagggcgaccatacacgtgtaaagaaagttgtctcgtccaaagttggt
ggtttaatggcatttgcaaagaagagagttacatgtatcggttgcaaagctgttctgcca
aaagatggtgcggtttgtgttcattgcgagtcgcgcgaatcacaaatctaccaaaaagag
attgccaagttatcaagtcttgaagagaaattctcaaggctttggacacagtgccagcgg
tgccaaggctcattacacgaggaagttatttgtacgagccgtgactgtccgatattctac
atgaggaaaaaggttcgaatcgaccttgaaagtcaaagttcagtccttagacggtttggt
tgcccagcttggtga
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integrated database retrieval system
