Ciona intestinalis (yellow sea squirt): 100179093 Help Entry 100179093         CDS       T01056                                  Name (RefSeq) replication factor C subunit 5   KO K10756   replication factor C subunit 3/5 Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin03030   DNA replication cin03410   Base excision repair cin03420   Nucleotide excision repair cin03430   Mismatch repair Brite KEGG Orthology (KO) [BR:cin00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     100179093    03410 Base excision repair     100179093    03420 Nucleotide excision repair     100179093    03430 Mismatch repair     100179093  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:cin03032]     100179093    03036 Chromosome and associated proteins [BR:cin03036]     100179093    03400 DNA repair and recombination proteins [BR:cin03400]     100179093 DNA replication proteins [BR:cin03032]  Eukaryotic type   DNA Replication Elongation Factors    RFC (replication factor C)     100179093   DNA Replication Termination Factors    ELG1-RFC complex     100179093 Chromosome and associated proteins [BR:cin03036]  Eukaryotic type   Sister chromatid cohesion proteins    CTF18-RFC complex     100179093 DNA repair and recombination proteins [BR:cin03400]  Eukaryotic type   SSBR (single strand breaks repair)    MMR (mismatch excision repair)     RFC (replication factor C)      100179093   Check point factors    HRAD17(Rad24)-RFC complex     100179093 SSDB OrthologParalogGFIT Motif Pfam:  Rep_fac_C AAA DNA_pol3_delta2 AAA_lid_RFC1 Rad17 RCF1-5-like_lid AAA_assoc_2 AAA_22 AAA_11 AAA_24 RuvB_N DNAX_ATPase_lid AAA_14 AAA_7 ResIII AAA_16 AAA_5 DEAD AAA_19 PhoH DUF815 AAA_3 Mg_chelatase AAA_30 Thioredoxin_6 nSTAND3 TIP49 nSTAND_NTPase5 AAA_2 bpMoxR ATPase_2 Motif Other DBs NCBI-GeneID:  100179093 NCBI-ProteinID:  XP_002129710 Ensembl:  ENSCING00000018895 LinkDB All DBs Position Unknown AA seq 327 aa AA seqDB search MSKSTPNLPWVEKYRPESLDDLISHEDILSTISGFLAQNRLPHLLFYGPPGTGKTSTILA CARKLYSTTQFNSMVLELNASDDRGIGVVRNQILSFASTRTIFNKGFKLIILDEADAMTK DAQNALRRVMEKFMENTRFCLICNYLTKIIPAIQSRCTRFRFGPLTTDKISSRLEYIIKV EQLNVTEDGLNALVTLANGDMRKALNILQSSSMAYNEVDEDGVYKCTGRPRRDDIKKIMK WMLNEDYTTAYRSIMELNMTTSMALQDIIEQIHLFVHEVHFPVAVRIYLLDKLADIEHRL ASGTSEKLQLGSLVSAFQHARNIVAAK NT seq 984 nt NT seq  +upstreamnt  +downstreamnt atgtcgaagtcgacgcctaatctaccatgggtggagaaatatcgaccagaatcgctcgat gacctgatttcacacgaagatattttgagcacaatatctggattccttgcgcagaataga cttccccaccttctgttttatggaccaccaggcacgggcaaaacgtccacaatacttgcg tgtgcgcggaagttatattcgacaacccagtttaactcgatggttcttgaacttaacgct tcggatgatcgagggatcggggtcgtgaggaaccaaatcttaagcttcgcgagcactcgt acaatctttaacaaaggtttcaagttgattatcctcgacgaagccgatgcgatgacgaaa gatgcacagaatgcgttgcggagggtgatggaaaagtttatggagaacacgaggttttgt ctcatctgtaattacttgactaagattattcctgccatccaatcacgatgcaccaggttc aggttcggaccgttaaccaccgataaaataagttcaaggttggaatatatcatcaaggtt gaacaacttaatgtcacagaggacggtttgaatgctttggtgaccttggccaacggtgac atgaggaaagctttaaatattctacaaagttcatccatggcttataacgaggtggatgag gatggggtttataaatgcacaggtcggccaaggagagatgatatcaagaagattatgaaa tggatgttaaatgaagattacacgaccgcgtatcgatccatcatggaactaaacatgacc accagcatggctctgcaggatatcattgaacaaatccatttattcgtgcacgaggttcat ttccccgtggccgtgcggatttatttgctggacaaacttgcggacatcgaacatcgactt gcgtcgggcacgagcgaaaagttacaacttggttcgttggtgtcggcgttccaacacgcg aggaacatcgtggcagcgaagtaa

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