Ciona intestinalis (yellow sea squirt): 100179100
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Entry
100179100 CDS
T01056
Name
(RefSeq) phenylalanine--tRNA ligase, mitochondrial
KO
K01889
phenylalanyl-tRNA synthetase alpha chain [EC:
6.1.1.20
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
100179100
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
cin01007
]
100179100
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cin03016
]
100179100
Enzymes [BR:
cin01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.20 phenylalanine---tRNA ligase
100179100
Amino acid related enzymes [BR:
cin01007
]
Aminoacyl-tRNA synthetase
Class II (U)
100179100
Transfer RNA biogenesis [BR:
cin03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
100179100
Prokaryotic type
100179100
BRITE hierarchy
SSDB
Ortholog
Paralog
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GFIT
Motif
Pfam:
tRNA-synt_2d
FDX-ACB
tRNA-synt_2
Motif
Other DBs
NCBI-GeneID:
100179100
NCBI-ProteinID:
XP_009857978
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All DBs
Position
3:1659565..1666357
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AA seq
463 aa
AA seq
DB search
MSSVILHERSKVAQLLKRYLKRIGISSAGLNLENSAYVHSQVGLHHMQKRYATKHKQLGL
DNIKISGKTYTCDDWTNVTEKILSYVGKNLHVQKDHPICIIKEAIVQHFYNSYVKARRVP
LFAVFDNLAPVVTVQQNFDSLLIPQNHVSRKKSENYYVNKNTVLRAHTSAHEHELIKSGL
DAYLMVGDVYRRDTIDATHFPVFHQLEGVRLFNSQQLFSKCEGASADLTLFEVGDETKDK
QSCHTLETSKLLEFNLKQTIEDCIKDIFGKEAECKWVDAYFPFTHPSYELEIKYNDEWIE
MLGCGILRQEILNQAGACDQVAWAFGLGLERLAMKLFNIPDIRYMWTEDESFLAQFRCHS
DFKSIKFKPIVSKQPALVNDVAFWVPTDFTPNDFYDLVRSVDDGLVQTITLIDQFTHSSG
KQSHCYRLFYRHVSRALTQAQVNEVHGKIKRAAVKHLNVEGRW
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgagctctgtgatcttgcatgaaagaagtaaagtagctcaactgcttaaaagatatttg
aaaagaattggaatcagttcagctggcttgaatcttgaaaactctgcatacgtacattct
caggtgggtttacaccacatgcaaaagaggtatgctacaaaacacaaacagcttggttta
gacaatattaaaatatctgggaaaacatatacctgtgatgattggaccaatgtgacagaa
aagattctcagttatgttgggaagaatttacatgtacagaaggatcatccgatttgcatt
ataaaggaggcaatcgttcaacacttctacaactcctatgttaaagcacggagagttcct
ttgtttgccgtatttgataatttagcaccggtcgtcacagttcagcagaattttgattct
ttgctaattccacaaaatcatgttagcaggaagaagtcagagaattattatgttaacaag
aatacggtgctacgtgcacacacaagtgcacatgaacatgagttgattaaatcaggttta
gatgcttacctaatggtgggagatgtgtatagacgggatacaatcgatgcaacacacttt
cccgtatttcaccaacttgaaggtgtacgacttttcaactctcaacagttgttttcaaaa
tgtgaaggtgcaagtgctgatttgacgttgtttgaagtgggtgatgaaacaaaagacaaa
caatcgtgtcacacacttgaaacttctaaattactggagtttaacttaaaacaaacaata
gaagattgtattaaagatatttttggaaaagaggcggaatgtaaatgggttgatgcttac
tttcctttcactcatccttcctatgaattggagatcaagtataatgatgaatggattgaa
atgttggggtgtggaatccttagacaagaaattcttaaccaagctggtgcatgtgatcaa
gtggcttgggcatttgggttggggctggaaaggttagcaatgaaattatttaatattcct
gatattcgatatatgtggactgaagatgaatcatttcttgcacaatttcgttgtcatagt
gattttaaatccattaaatttaagccaattgtaagcaaacaaccagctcttgtaaatgat
gttgctttctgggttccaactgatttcacgccaaatgatttttacgaccttgttcgtagt
gtggatgatgggcttgtacaaaccatcacattaatagaccaattcactcattcaagtgga
aaacaaagccactgctatcggttgttctatcgccatgtgtcccgtgctcttactcaagct
caagtaaacgaagtccatggaaaaattaagagagcggctgtaaaacaccttaatgtagaa
ggacggtggtaa
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