Ciona intestinalis (yellow sea squirt): 100179190
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Entry
100179190 CDS
T01056
Name
(RefSeq) DNA polymerase subunit gamma-1-like
KO
K02332
DNA polymerase gamma 1 [EC:
2.7.7.7
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100179190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cin03032
]
100179190
03029 Mitochondrial biogenesis [BR:
cin03029
]
100179190
Enzymes [BR:
cin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
100179190
DNA replication proteins [BR:
cin03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase gamma complex (mitochondrial)
100179190
Mitochondrial biogenesis [BR:
cin03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Mitochondrial DNA polymerase
100179190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNApol_Exo
DNA_pol_A
MRVI1
Motif
Other DBs
NCBI-GeneID:
100179190
NCBI-ProteinID:
XP_002125927
Ensembl:
ENSCING00000001343
LinkDB
All DBs
Position
12:4333517..4337275
Genome browser
AA seq
1122 aa
AA seq
DB search
MISKYKTLWNLRPYNRSIWKNNSMLKYRNISSSEAKVKKDTTSRYNKFGIQMLPEKLHKQ
IFKETRIKDENPKQIQQSIEHLDKFGLWGKEQESLPDYDVTLPKLYGNNVNEHFENVASE
QSRPYREALNKLVKNELPNMPGLDDWVDQPGWTRYTYFNGKLMTEPVEYPAGDAVVFDCE
VLVSASEAPIMAVAASTDAWFSWSSSCLKQEDPRMEANLESMIPIESAVHVKENCTECKL
VIGHNVGYDRARIQEQYYSQLTNVRFLDTMSMHIGVSGFNFQQRVLSQATRSEVGENFVS
GSSAFDNDWVSMGTTNALKEVHKFYCGKTLDKELRDVFVTGNIKDVRENFQELMWYCAKD
VQATYNVLAKLTPLFFDRFPHPVTFAGMLEMGQMYLPVNNNWFRYIRSCQDQYNSLNLEL
EKHLTGLASDACHYAVNEKYKTDKWLCDLDWTTRPYKLLTKPRKGWVAKEKPDLKVKSYL
LPLDYNTEELKFLGKSIRKERKKLDLIEKLNETANRLPLVKPHMPGAPKWYSELCVPEKD
QNWKPGATLLSTLTRVTPRLLRLMWQGCPLYHVKDYGWGYLCPDQTAPPVEKKVEDEDLL
KEVDQESWNKQEVQSNHTPAENIEGLPDGYTFHRLPHAEGAGKNVGSPLSRDFISHVESG
LLSSYNPLDALRCLEINKITSYWRSSQKRVLNQIVVEVANDKRRDCNNTPNEFNNKDMAY
SAIVPQAIVCGAVSRRAVERVWLTASNPQLDRIGSELKAMVQAPPGFCFVGADVDSQELW
IASLLGDASSAKEHGCTALSWMTLRGNKKEGTDLHSTTAASIGISRDQAKVFNYGRMYGA
GKKSSLRSLMQFNKDLSREECIAKVNKLYGITKGEVQYKLSRDALWIIQKTGIELNSEAM
TSGYASFDDVTLIQNVANEASNYTARINRNDLVCGRRWHGGIESHMFNKVEEISNSKTPK
TPALDCKISRALEPGKVNGNFVTTRMNWVVQSSAVDYLHLLLVSMRWLIEKYKLDCRFVL
SIHDEVRYMSSYEHRHKTALALQISNLLTRSMFAYKLGMDDLPLGVAFFSCIEVDSVVRK
SADDDCVTPSNSEGLSARYGIPLGESYDVNEILKATNNGQFH
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgatatcgaaatataaaacgttgtggaacttacgtccttacaataggagtatttggaaa
aacaattcaatgctaaaatacaggaatatttcatcttctgaggcaaaagttaaaaaagat
acgacttcaagatataacaaatttggaattcagatgttaccagaaaaattacacaagcaa
atttttaaagaaacgagaataaaagacgagaatccgaaacaaattcagcaaagcattgaa
catttggataagtttggtctgtggggtaaggagcaggaatctctgcctgattatgacgtc
acattgccgaaattatatggtaacaatgtgaatgaacattttgaaaatgttgcttctgag
caaagtaggccttatagggaagctttgaacaaattagtaaaaaatgagcttcctaatatg
ccgggccttgatgactgggtggatcaaccagggtggacaagatacacttattttaatggt
aaattaatgactgaacctgtggaatacccggctggtgatgctgttgtgttcgattgtgaa
gttttggtaagtgcaagtgaagcaccgataatggcagtggctgcttctacagatgcttgg
ttttcatggagtagctcatgcttaaaacaggaggatcctagaatggaggcgaacctagaa
tccatgatacccattgagtcagcggtacacgttaaagaaaattgtacagaatgcaaactt
gtaattgggcacaatgtgggctatgatagggcgagaattcaagagcaatattattctcaa
ttgaccaatgtaaggttcttggatacaatgagtatgcatataggtgtcagcggttttaat
tttcagcaacgggttttgtcacaagccacaaggtctgaggttggggagaattttgtttct
ggatcttctgcgtttgataatgattgggtgtcaatggggaccactaatgcattgaaagaa
gttcataagttttactgtgggaaaacattagataaggaattaagggatgttttcgtgacc
ggtaacattaaagatgtgagagagaattttcaagagctaatgtggtattgtgctaaagat
gtacaagctacgtataacgtgctggcaaagttgactcctttgttttttgatcgttttccg
caccctgttacttttgcaggaatgcttgaaatgggccagatgtatttacctgtgaataac
aactggttcaggtacatacggtcatgtcaggaccaatacaacagcttaaacttggaactg
gaaaaacatttgacaggtttagcaagcgacgcatgtcactatgctgtcaatgagaaatat
aaaacagataaatggctgtgtgacctggactggaccacccgtccgtacaaattgttaact
aaaccacgaaaaggttgggtggcaaaggaaaaacctgatttaaaagtaaaatcctatctt
ttaccgttggactacaatactgaggaattaaagttcttgggtaaatctattagaaaggaa
cgaaaaaagcttgatttgattgaaaaactgaatgaaactgcaaacagattgccgctggtt
aaacctcatatgccaggtgctcctaagtggtacagtgagctgtgtgtgcctgagaaagat
caaaactggaagccaggagctacattgctttctaccctcactagagtgactcccagactt
ctacgtttgatgtggcagggatgtcctctttaccatgtgaaggattatggatgggggtat
ttgtgtccggatcaaactgctcctccagttgagaaaaaggttgaagatgaggatttattg
aaagaagtcgatcaagaatcatggaacaaacaggaggtgcaaagcaaccatacgcctgcg
gaaaacatcgaaggacttccagatggttacacatttcatagacttccccatgcagaaggt
gctgggaaaaatgttgggagtccgctgtctagggattttatatcgcatgttgaaagtgga
ttactgagctcttataacccattagatgccctgagatgtttggaaatcaacaaaataaca
tcttactggcgatcgtcgcaaaaacgagttttgaatcaaattgtagtggaagttgctaac
gataaacgaagagattgtaataatacaccaaatgagtttaacaataaagatatggcctac
agtgctatcgttcctcaagctatcgtgtgtggtgctgtttctcgtagggcggtggaacgc
gtatggcttactgctagtaacccgcagttggatcgtattggtagtgagttaaaagcaatg
gtacaagcgccgcctgggttttgttttgtcggtgccgacgttgactcgcaggagttatgg
attgcctcgttgctcggcgatgcgtcttctgcgaaagaacatggatgcacagcgctctct
tggatgacgctacgcggtaataaaaaggaaggtaccgacctacacagcactacagcggcg
tcaatcgggatatctcgggatcaggcgaaggttttcaattacggtcgtatgtatggtgct
ggaaagaaatcatcgcttcgaagtttaatgcagtttaataaggatctatcaagggaagaa
tgcattgctaaagtgaataagttgtacggtataacgaaaggtgaggtacagtataagcta
agccgtgatgcgctatggattattcagaaaaccggcattgaattaaactctgaagcgatg
acgagcggttacgcgtcatttgatgacgtcacgcttattcagaatgttgcgaacgaagcg
tcgaactatacagccagaataaaccggaatgatctggtttgtggtaggcgttggcacggc
ggaatagagtcccatatgttcaacaaagtagaagaaatatcgaacagcaagactccaaaa
acgcctgcacttgactgcaaaatcagccgcgcgcttgagccgggcaaagtgaacggaaat
ttcgtaactactcgcatgaactgggtcgttcaaagctcggctgttgattatttgcaccta
ctgctcgtatcaatgcggtggttgattgaaaaatacaaactagactgcagattcgtgtta
agcatacatgatgaggtccgttatatgtccagttatgaacatcgccacaaaactgcgctt
gccctgcaaatttcgaaccttttaacgcgttctatgttcgcctacaagctgggtatggac
gacttgcctttgggagttgcattttttagctgcatagaagtggatagtgtggttcgaaaa
agcgccgacgatgattgcgtaacaccctctaactctgagggtttatcagcaagatacgga
ataccactgggcgaatcttatgacgttaatgaaatattaaaagccacaaataacggccaa
tttcattaa
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