Ciona intestinalis (yellow sea squirt): 100179241 Help Entry 100179241         CDS       T01056                                  Name (RefSeq) plexin-A2-like isoform X1   KO K06820   plexin A Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin04517   IgSF CAM signaling Brite KEGG Orthology (KO) [BR:cin00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04517 IgSF CAM signaling     100179241 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Plexin_cytopl Plexin_RBD TIG PSI TIG_2 PSI_PlexinA-B Sema DUF7498 PSI_integrin DUF2730 TMEM154 DUF4083 DUF8429 RIFIN LapA_dom AF_1457 Motif Other DBs NCBI-GeneID:  100179241 NCBI-ProteinID:  XP_026691093 LinkDB All DBs Position 7:6006787..6032339 Genome browser AA seq 1580 aa AA seqDB search MGEAVRAQCGGNFDIDPSKEVCQHSPAVWEVTHFLQDPTVWSRDAVYESERTITAIEFTK FMSQPNDHTIVFMGTDNGNLLKFRMDTQSVYETVPIDPGHPVTSLKLGWGDYSTTQLIYG MTRNKLVALPQFNCEQHTSCGECLAASDPFCGWCTIESKCSSTGNCKQSNNVNFVFFQNS ETGGCPTLTPQTPEPLHFSVSSTAPTKKVLLVGENIPFPSKLRYRCHYGTSFTTNARIDA QRNRIDCGKPPSTTTTPIPESGYLVIPLSLTQEDGPVIATTNITLYECSHHKSCMSCAGS GFGCVWCPSEHKCTDSNQDCNQLSDVIINSTACPQLTLLPFLHFPPTFPRHTPATIYLNV ADRLNLTLAASNLHSLQRVAPDDFICDITIPGESPQRVSGINEGSAIKCLNVRGQLPPNQ RSKNATIKVYYDTTNILDNPHNINVEMYTCALAEQNNCGKCLQSPTRWHCGWCEQSKSCT IGRACMTSQWTESTSSKGCQNPTITEFQPATVPIGGNSRVTIRGTNLDRGLNMRVEVKGH QCTNLQMVDIKDCCSFSCEFNGIGRTEGKLPEGRISLCITHEGSSRCKSGRAYNATSDQI FKFVQPVITNFSPKSAISGWGTEVTVEGKYLDTGNDVTIKIVGEDCVVDRSTLTSTSLVC HLPCRATRNRRSTRHHHHRHYRQAVPSFLAMFDGFIRTVSEFRFEHHVALEDITPGISIS SGGIPQTITGVNLHLIDRPRIVVSVNGKKFVHTCIVDGFQLICSSPNITTGVTMRNGDHI TGILSIETLQPNCAEVHNNDVQITYVPNPYFEHFKGDDRTKPFTGESLYIRGSNLCPINN DCDKTIISVMVGNWNCNITNVNYDTVTCTPPSEADNGEYNVVVKIGGYEQNVGRLVYNNT SKTPTTMLIAIVIIIVVVLAIVVTALVCIYRRRANRSDEEVKNMQVQMDRMESRVANVCK EAFAELQTDMSELDTVGGGTGIPYLEYRVYLMRVLFPDPLTAEQQHTLLLSDYRTNSVRQ GRGRTIGMERFNRLLENKVFMMSLIRCLEQQRGFSMKDKGTVAGLIMVIFQDRLHYATEI LEQLLADLIRKNMESRNHPKLLLRRTESVAEKMLTHWFSILLYRFVVECAGEPLFMLCRA IRQQVDKGPVDMYTGEARYSLSEDKLLRQDVEHRTITLRVNNYLSELDIPDFAVKVLSCD SVSQVKRKILDVAYMNLPYSGRPHPAEVDIEWRQTRGSVTLRDEEPSANNGDNLMQVHTL EYYQISDGSHVSIIPRKHNSLLNHSMMSSTSKTSNHKHNGSGARLFQTTDGSNTSLPRYK QTSRSGTPTLMQDGTKFYHLVKPGDQDQREGNDRTNKMVSEIYLTRLLTTKGTIQKYVDD LFETVFSVVQRGHALPLAVKHMFDFLDHQADIHGITDPETVHTWKSNCLPLRFWVNLIKN PEFLYDINKSPIVDCYLSVIAQTFMDSCSTAEHKLGKDSPSNKLLYAKDIPAYKGWVERY YSDISNMPQLNHKDMSAFLAEESFIHQNEFNTSAALTQFFGYVQKYSGELLHILSVDPEA QRQRLFEQLEDVSVSMNGAG NT seq 4743 nt NT seq  +upstreamnt  +downstreamnt atgggtgaagcagtcagggctcagtgtggagggaactttgacattgacccatcgaaagaa gtttgccagcattccccggctgtttgggaagttacccacttcctccaggaccccaccgtg tggtcacgtgacgcagtgtatgaaagcgaacgcacgataaccgcgatagagttcaccaag tttatgtcgcaacccaacgatcataccatcgtgtttatgggaactgataatgggaatctt ttgaagttccgcatggatacacagtcggtttacgaaaccgtcccgattgaccccggccac cccgtaacctcgttgaaactcgggtggggtgattattcaacgactcagctaatatacggg atgactcgtaacaaattggtcgcattgccgcagtttaattgcgagcaacacacctcgtgt ggcgagtgtttggctgcgtccgatcctttttgtgggtggtgtaccattgaaagcaaatgc tcctccaccggaaactgcaaacaatcgaacaacgttaacttcgttttcttccaaaactcc gagacagggggctgtcccactttaaccccacaaaccccagaacccctacatttctcggtg tcttcaactgccccgactaaaaaggttttacttgtcggggaaaacattccctttccgagt aaactacgataccgatgtcactacggaacgagtttcaccacaaacgctagaatcgacgca caacgtaatagaatcgattgtgggaaacccccttctactacgacaaccccaatacctgag tcaggttacctagtgattcccctctccctcacccaggaggatggccccgtcatcgcaacc accaatataacattgtacgaatgcagtcatcataaatcgtgtatgtcatgtgcagggagt ggcttcgggtgtgtgtggtgtccatccgaacataaatgtaccgatagtaaccaggattgc aaccaactatccgatgttataatcaactcaacagcttgcccccagctaaccctcctaccc ttcctacacttcccccccaccttcccccgccacaccccggccactatatacctcaacgtg gccgaccgtctcaacttgacccttgctgcgtcgaacctgcattctctccagcgggtggca ccagatgatttcatctgtgacatcacaatacctggggaatccccgcaacgagtatcggga attaatgaaggcagcgccatcaagtgtcttaatgtccgagggcaactcccaccaaaccaa cgaagcaagaacgcaaccatcaaagtttactacgatacaaccaacatactggataacccg cataatattaacgtcgagatgtacacatgcgcattagcggagcagaacaactgcggcaag tgcctccaatcccccactaggtggcactgtggatggtgcgagcaatcgaaaagttgcacg attggtcgagcgtgtatgacatcacaatggacagaatcgacctcaagtaaaggttgtcaa aacccaactattactgagttccaacccgctacagtaccgataggggggaactcccgggtg acgattaggggtacgaaccttgacagagggttaaatatgagggtggaggtcaaaggtcat caatgtacgaacctgcagatggtggatatcaaggattgttgttcgttttcgtgcgagttc aatggaataggtcgcactgaggggaaactccctgaaggaagaataagtttatgtatcacc catgagggaagcagtcggtgtaaaagtggccgagcttataacgcaacctctgaccagatt tttaaattcgtccaaccagtaataacgaacttttccccgaaatctgcaatatctggttgg ggtaccgaggttacggttgaggggaagtacctagatacaggaaatgatgtcacaattaaa attgtcggcgaggattgcgtcgtggatcgttccacgttgacctctacctccctcgtgtgt catctaccgtgcagagcgacgaggaaccgacgaagtacgcgacaccaccaccatagacat tatcggcaagctgtcccaagtttcctggcgatgttcgacggttttattcgaacagtgtcc gagttccgattcgaacaccatgtcgcgttggaggatataactcctgggatatctatcagt agcgggggaatcccccaaaccattactggggtgaacctacatttgattgacaggccgagg atcgtggtctcggtgaacgggaagaagttcgttcatacatgcatcgttgatggattccaa ctaatctgttcgtcgcccaacattacaacgggggtgaccatgcgtaacggggaccacatc actggcatattatcgattgaaacattgcaaccgaactgcgcagaggtgcacaacaacgac gtgcagatcacttacgtgcccaacccttactttgagcatttcaaaggcgacgatcgaaca aaacctttcaccggggaatcgctttatatacggggatccaatttatgtccgataaacaac gattgtgacaaaacaataatcagtgtgatggtgggcaattggaattgtaacattacgaac gttaattacgacacggtgacatgcacgccacctagtgaggccgataacggggaatacaat gttgtggtgaaaataggaggttacgagcaaaatgttggtcggttggtttacaacaacaca agtaaaacaccaacaaccatgttgatagctatcgttatcatcattgttgtggtgttggcc attgttgtcactgcgctggtttgcatctatcgtcgtcgtgccaaccgtagcgacgaagaa gtgaagaatatgcaagtgcagatggatcgcatggaatcgagggttgcgaatgtttgcaaa gaagcatttgcggagttacaaacggacatgtccgagttagacaccgtgggaggggggacg ggaattccttacttggaatacagggtttacttaatgcgtgttttgttccctgaccctcta actgcagaacaacaacatacgttgctattatcagactaccgcacgaacagcgtccgtcaa ggtcgcggtcgaacgatcgggatggaacgtttcaatcgattgttggaaaacaaagtgttt atgatgtcactgattcgatgtttggaacaacaaagaggtttctccatgaaagacaaggga acagtagcagggttgattatggtgatttttcaagatcgactccactacgccaccgaaata ttggaacaactcctcgctgatttgattcgtaaaaacatggaaagtcgaaatcatcccaaa ttattgctgcgtcgtactgagtcggtagctgagaaaatgctgactcattggttcagtatt ttgctttatcgcttcgtcgtggaatgcgctggcgaacctttgttcatgttatgtcgtgcg atacgtcagcaagtagacaagggtccggttgatatgtacacgggggaagcgaggtactcg ttaagcgaggataaactactcaggcaagatgtggaacatcggactattacactgcgtgtg aacaactatttatcggaacttgacattcctgactttgctgtgaaagtgttgagttgcgat tcagtgtcgcaggtaaagcggaagatattagacgtcgcgtacatgaacctcccgtattcg gggcgaccccaccctgcggaggtcgatattgaatggagacaaacacgtggaagtgtaaca ttacgggacgaggagccgtcggcaaacaacggtgacaacttgatgcaagtccatacgtta gaatattatcagataagcgacggatctcacgtatcaatcatccctcgtaaacataactcg ttactcaaccactcgatgatgtcatcaacgtcaaaaacaagcaatcataaacataacgga agtggtgcaagattattccaaaccacggatggcagtaacacaagtttgcctcgttataaa caaaccagtcgatctggcaccccaacgctgatgcaagatggaactaaattctatcatctt gtaaaaccaggcgaccaggaccaacgggagggaaacgaccgaacgaacaaaatggtttcc gagatttatttaacgaggttgttgaccaccaagggcacaatacagaaatacgtcgacgat ttattcgagacggttttcagcgtagtccaacgaggccacgcccttcctctcgctgttaaa catatgtttgacttcctcgaccatcaagcggatatccacgggatcaccgacccggagact gtgcatacttggaagagtaactgcctcccgttacgattctgggtgaacttgatcaagaac cctgagttcctttatgacatcaacaaatcacccatcgtggattgttacttgtccgtgatc gcacaaactttcatggattcgtgctcgacggccgaacacaagctcgggaaagattctccg tcgaataaattactttacgctaaagatattcccgcttataaaggatgggtggaaagatat tactcggatatctccaacatgccacaactcaaccacaaggacatgtcagcattccttgct gaagaatcattcattcaccagaatgagttcaacacgagcgccgccctcacccaattcttc gggtacgtccagaaatattcgggcgaactcctccacatattaagtgtagaccccgaagcc cagcgtcagcgattatttgaacaactcgaagatgtttcagtttccatgaacggcgctggt tag

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