Ciona intestinalis (yellow sea squirt): 100179309
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Entry
100179309 CDS
T01056
Name
(RefSeq) exosome complex component MTR3-like
KO
K12587
exosome complex component MTR3
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100179309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100179309
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
100179309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
Vault_3
Motif
Other DBs
NCBI-GeneID:
100179309
NCBI-ProteinID:
XP_002126010
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Position
4:complement(4844523..4845891)
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AA seq
276 aa
AA seq
DB search
MPTDSRRLPAPDISYNAKLFTEIEKLSLLDDEEKRADGRYVTQPRDVFLQCGVITQAKGS
AYFEMNKTKVICSVYGPKDIEMREEFQINKGKLKCELKYAPYSSPKHGDHIPGASDVEKS
DILLEAISSGVCLQRYPKSQIDVYVIVLEDDGSVMPAAITAASVALVDAGIEMYDVITAS
SIRIAGQDTFIIDPTSSEEFSPLNLEKSNDLNQGMVMVALLPSINQVSSVVSSGHLECNV
LQEAIRSCRYSAQNLHSIVRKCLVNSLKKSNQNNSH
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgccaacggattcccgtcgattgccagctccagacatcagttataatgcgaaactgttc
acagagattgagaagttgagtttacttgatgatgaggagaagagagctgatgggagatac
gtcacacaacctagggatgttttcctgcagtgcggagttattacacaagccaaagggtca
gcttattttgaaatgaacaaaacaaaagtgatttgctctgtttatggaccaaaagacatt
gaaatgagagaagaatttcaaatcaataaggggaagttaaaatgtgagttgaaatacgcg
ccatattcgagcccaaaacatggagatcacattccaggagcttctgatgtggaaaaatca
gacattttactcgaagcaatatcatcaggtgtctgtctccaacgttatcctaaatctcaa
atagacgtttacgttatagtactagaggatgatggttcagtgatgccagccgcaattaca
gcagcatctgttgcccttgttgatgctgggatagaaatgtatgatgtcatcactgcttca
tcaatacgaattgctgggcaagatacgttcataattgacccaacatccagtgaagaattt
tcacctttaaacttggaaaagtcgaatgatctcaaccaaggaatggtaatggttgctttg
ctgccatcaatcaaccaagtgtcatctgttgtatcatcaggacatcttgaatgcaatgtc
ttgcaagaagcaatcaggtcatgcagatattcagcacaaaatcttcactccattgttaga
aaatgtttggtaaattcactcaaaaaaagcaatcaaaataattcacattaa
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