Ciona intestinalis (yellow sea squirt): 100179391
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Entry
100179391 CDS
T01056
Name
(RefSeq) pre-rRNA processing protein FTSJ3
KO
K14857
AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cin03009
]
100179391
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
100179391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spb1_C
FtsJ
DUF3381
Motif
Other DBs
NCBI-GeneID:
100179391
NCBI-ProteinID:
XP_002122891
Ensembl:
ENSCING00000025069
LinkDB
All DBs
Position
Unknown
AA seq
744 aa
AA seq
DB search
MGKKKQVAKARKDKYYHLAKETGYRARSAFKLLQLNKKFNFLQSSQACVDLCAAPGGWLQ
VASEHMPMSSIIVGVDLVPIRPVPKCVTFQDDITKESCRTQLRRELHKWKVDCFLHDGAP
NVGKNWLHDAYSQSVLTLAALKLASEFLCKGGWFITKVFRSKDYQALMWIFGQLFNKVHA
TKPQASRNVSAEIFVVCQGFKSPDKIDKKFFDPKSVFQEVEAKTRPVNILDFEPKKKKKA
KGYGDEAKDLLYMKKTVSEFLGCSQPMQMLSEISEIVFEDDDQKVHPLVTDEIKEHVKDI
KRLGKKEIKTLLKWHKKWQKLNAPQVEEVEENEEEEVDSEEEMERKIQEIQENETRELKK
KKKVVTKERQKLRERMSNMVTSTNSQEDMELFALSKINSARKMGTVMENVEEFELEEGSD
EEGSGSSEEEEEEEEDEGDNEGNPLIHSLEDKVEDDYQTKLWFGKEEFENIADDLDELEE
IESARKIYENRVEKKKKEVEEKTEVQKKIEAYNSDSSDSDSDYDVEETLNEAKPVTTTKG
KKQKTQKLDAEALALGTVIATSNKRKRDVIDDSFNRYTFNDEECALPDWFLEDEKKRVVK
NHLRHHVSKDMMDFYGSKDKGINVRTIKKVVEAKARKKRKATKKMEKARKQAEGISDTAD
MSTKEKAAHIKNIYKKAGLLKKKKENTTYVFAKRGTGKRVRRPPGVSGKFKVVDKRMKKD
LRPQGKNSKQSKGKSGAGGGKKRK
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagaaaaagcaagttgcgaaggcccgtaaagataaatattatcatttagcaaaa
gaaactgggtatcgtgctcgctctgcgttcaaacttttgcagcttaataaaaagtttaat
ttcttacaatcgtcgcaagcatgcgtggacctctgtgctgcccctggtggttggttacag
gtagcatcggaacatatgccgatgtcgagtatcattgtcggagtggatctcgtcccgatt
cgccccgttcccaagtgtgttactttccaagatgacatcactaaagaaagttgcaggaca
cagcttagacgggaactccataagtggaaggtagattgcttccttcatgatggagcgcct
aatgttggtaagaattggcttcatgatgcttactcacagtcagtgctgactctcgctgct
ctcaagctggcatctgagtttctgtgcaaaggaggatggtttattacaaaggtattcagg
tccaaggattaccaagctctaatgtggattttcgggcaactttttaacaaagttcacgcc
acaaagccccaagcttcaagaaatgtgtcggccgaaatatttgttgtttgccaagggttt
aaaagtccggataaaatcgataaaaagttttttgacccaaaatctgtgtttcaagaagtt
gaagctaagacaagacccgtcaatatccttgattttgaacctaaaaaaaagaagaaggca
aagggatatggcgatgaagccaaggatctgctgtacatgaagaaaactgtttcggagttt
cttggttgctcccaaccaatgcaaatgttaagcgagatcagcgagattgtttttgaggat
gacgatcaaaaagttcatcctctcgtgactgatgaaataaaggagcatgtcaaagatatc
aaacgtcttggtaaaaaagagatcaaaacgcttttaaaatggcataaaaagtggcaaaag
ttaaatgctccacaggttgaagaagtggaagagaatgaagaagaagaagttgatagcgag
gaagagatggagagaaagatccaagagatacaagagaatgaaacaagagaactcaagaaa
aagaaaaaggttgtgacaaaagagcgacaaaagttacgcgaacgaatgagcaacatggtt
acttccaccaacagccaggaggatatggagctgttcgctctttcgaagattaattctgcg
cggaagatgggaacggtaatggagaatgtggaggagttcgagttggaagagggatcggat
gaagaggggagtgggagcagtgaggaagaggaagaggaggaggaggatgagggtgataat
gaggggaatccactcattcattcattggaagataaagttgaagatgattatcaaacaaag
ctttggtttggaaaggaggagttcgagaacatcgccgatgatttggatgagttggaagaa
attgaatccgcgaggaagatttacgaaaatcgtgttgagaagaagaagaaagaggtagaa
gagaaaactgaagtgcagaagaagattgaggcgtataacagcgattcatccgatagcgat
agcgactatgatgtagaagaaacgcttaatgaagctaaacctgttacaacaactaaaggt
aagaagcaaaaaactcaaaagttggatgcagaagctctggcattgggaacagtgatcgca
acttctaataaacgcaagcgagatgtgattgatgattcgtttaaccggtatacctttaac
gacgaggaatgtgctctgcccgattggttcttggaggatgagaaaaagagggttgttaaa
aatcatttgcgacaccatgtgtccaaagatatgatggatttctatggttccaaggacaaa
ggaatcaatgttaggacgattaaaaaagttgttgaagcgaaggcgagaaagaagagaaag
gcaaccaagaaaatggagaaagcacgaaaacaagcggaggggatttcagatacagctgat
atgtcaactaaagaaaaggctgcgcatataaagaacatttataaaaaagcaggtttgcta
aaaaagaaaaaagagaacaccacgtatgtattcgcgaagcggggcactggaaaacgagtt
agacgaccaccgggtgtcagtggtaagttcaaagttgtcgataaacgaatgaaaaaagac
ctccgacctcaagggaagaattcgaaacaatctaaaggcaaaagtggtgcgggtggtggg
aagaaaaggaaataa
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