Ciona intestinalis (yellow sea squirt): 100179421
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Entry
100179421 CDS
T01056
Name
(RefSeq) polycystin-2-like
KO
K04986
polycystin 2
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cin03037
]
100179421
04040 Ion channels [BR:
cin04040
]
100179421
Cilium and associated proteins [BR:
cin03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
100179421
Ion channels [BR:
cin04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
100179421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PKD_channel
Polycystin_dom
Ion_trans
Motif
Other DBs
NCBI-GeneID:
100179421
NCBI-ProteinID:
XP_002122327
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Position
4:complement(2744366..2747836)
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AA seq
883 aa
AA seq
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MSKIPSNTVKPTPQSVISIKVDDYMKNNSLATSEHGSNQDAISISDIEMNRPVEKYSKQN
SNIEAQTKSSKTKFSSSFSIKVDNYTKSSSLETSEHSSNQDAISISDIELNIGKKSPQKS
NADAKFDDTAGQSSLNKEMFLKDDVERWFLPDWCRWFAWLLVFFHVALCSFLTVVYGLQY
GNSKFFNWIFTFALSIFQNMFVVSPIRMVLMATWFASYGRSAVQRKDWVGFTGKWARLRA
LAKWNDLKKQYVNLDRVSIANLAEKASILGEDVVGFVSFGGIKRAGEIVKRPWCYRFPTE
EGLVRAGKLRVAVTQVRRYWLEAISWTLLAVFVTALIVLQRDWRLLRLHNRARDYFVTSF
YEIQARGDVFEFLEDGLVPALFKENEAAIADRFDMLGPIRIRQTRIKPYPCPTLPNKVLK
KTCKPNNFEVDDLIYYETGDFGPTWTSADNKQEKDDHKSQTTSAWQYLNVGEDFGTKLAL
GNSIRRSMYPYGGYVVDLGYTSDDILPVVAGLKNSLWIDNATAAVFVQFSYITPSARHVT
AVTLVAEFLAEGGVNLCHQTHSYRPVYIYNIVDFIVMILQVLHLGVACLIVFDLFVQFHA
SRWTARGIYNVVVDLWNGLSALSVGLTVAAYSAYYYHITTGIAVTQAYRKDPGKYAAFST
PAYHNVNYFLLMSAVAFTAYMRSLKLFRGSRVVSLMMRTLSRSQNQLISVSFVVLVFIIA
YGHFGVLLFGNNKFDFRHIAAAGTALFSLMAGMDVQQPEHGVSSESWWAIYFGSFMMLVI
GIFLNLFAAVVGDTFHKVRHKRKMGENVHTEVLAVAWVQEQFLLFFGIPSTRFKEKYKEA
RASNESGESYDCYNSVTTNVTPLAQELQLMIAKHNDNKNSLTP
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaatcccatctaatacagtgaaaccaacacctcaatctgttataagcataaaa
gtagatgactacatgaaaaacaattcactggcaacttcagaacatggttctaatcaagat
gcgatcagtattagtgatattgaaatgaataggcctgtagaaaagtattctaaacaaaac
agtaacattgaagctcaaactaagagttccaaaacgaaattttcatctagttttagcata
aaagtggataattacacgaaaagcagttcattggaaacttcagagcatagttctaatcaa
gatgcgatcagtatcagcgatattgaattgaatattggaaaaaaatctcctcaaaagagt
aatgctgatgctaagtttgatgacaccgcaggtcaaagtagtttaaataaggagatgttt
ttaaaggacgatgttgaacgttggtttctaccagattggtgcagatggtttgcatggttg
ttagtgtttttccacgtcgctctttgctcgtttttaaccgtggtatacggcttgcagtat
gggaattccaagttctttaattggattttcacgtttgcgttgtcgatttttcagaatatg
ttcgtcgtttcgccgatcagaatggtgcttatggcgacttggttcgcttcttacggccgt
tctgcagtgcagagaaaagactgggtgggtttcacggggaagtgggcccgattacgtgcc
ctggctaaatggaatgacttgaaaaagcaatacgttaatttggaccgtgtgtcaatagca
aacttggcagaaaaagcaagcatacttggtgaagatgttgttggcttcgtgtcatttggt
ggcattaaaagggctggggaaattgtgaaacggccgtggtgttacagattcccaacggag
gaaggtttggttagagctggaaagttgagagtggcagtgacacaagtacggcgctattgg
ttggaagcaatttcctggaccttgctcgctgtgtttgtcactgctcttattgtgttgcaa
agagactggcggcttctgcgtctccacaaccgcgctagggattactttgtcacctcgttc
tacgaaattcaagcgagaggagacgttttcgagtttttagaagacggcttagtacctgct
ctttttaaagaaaatgaagccgccattgctgaccgttttgacatgctcggcccgattaga
attcgacagaccaggatcaaaccatacccatgccctactctcccaaacaaggtgctaaaa
aagacttgtaagcccaacaatttcgaagtggatgatttgatatattacgagacgggcgac
ttcggacctacgtggacgtctgctgataacaaacaagagaaagacgaccataagtctcaa
actaccagcgcttggcagtaccttaatgttggagaggatttcggaacaaagctggctctg
gggaactctattcggcgctccatgtatccctatggtgggtacgttgtagaccttgggtac
accagcgatgatattttgccggtcgttgctggcctgaaaaattctctatggattgacaat
gccactgctgctgtgtttgtgcaattttcgtatatcaccccgtctgctcgacacgtaact
gctgtcacattggtagccgagttcctggctgaaggcggcgtgaatttgtgccatcagact
cacagctataggcctgtgtatatttataacatagtcgacttcatagtgatgatacttcag
gttttacatctaggagttgcatgtctcatcgtgttcgatttattcgtgcaatttcacgca
tcgcgttggactgctcgaggaatctataatgttgttgtcgatttatggaacggtttaagc
gctcttagcgttggtctaactgtggctgcatattccgcgtattactatcacattaccact
ggcattgccgtaactcaagcgtacagaaaagaccctgggaaatatgcggcattttcaaca
cctgcataccacaatgtgaactactttttactcatgagcgctgttgcctttactgcttac
atgcggtcactcaaactattccgtggcagtcgcgtggtgtcgctgatgatgaggacttta
tctcgctcgcaaaaccagctgatcagcgtcagtttcgtagttctggttttcatcatagct
tacggtcactttggcgtgctgttgttcggcaataataagtttgacttcaggcacatagct
gctgcgggtaccgccctgttttctcttatggccggtatggacgtccagcagcccgaacac
ggcgtatcatcggagagttggtgggcaatttacttcggttcattcatgatgctcgtcatc
ggaatattcctcaatcttttcgctgctgttgtcggcgacactttccataaagttcgacac
aaacgaaaaatgggcgagaacgttcataccgaagtgctggcagtcgcatgggttcaagaa
caattcctgttgtttttcggtatcccatcgactagatttaaagaaaaatataaagaggct
cgtgcatctaatgaaagtggagaatcctatgattgctacaattcggtgacaacgaatgta
acacctttagcgcaagagctacaactcatgattgcaaaacacaatgacaataaaaattct
ctaacgccgtga
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