KEGG   Ciona intestinalis (yellow sea squirt): 100179544
Entry
100179544         CDS       T01056                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cin03036]
    100179544
   03400 DNA repair and recombination proteins [BR:cin03400]
    100179544
Chromosome and associated proteins [BR:cin03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    100179544
DNA repair and recombination proteins [BR:cin03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     100179544
SSDB
Motif
Pfam: MMS19_N MMS19_C IFRD
Other DBs
NCBI-GeneID: 100179544
NCBI-ProteinID: XP_002128657
Ensembl: ENSCING00000004390
LinkDB
Position
3:4209792..4214641
AA seq 1026 aa
MEKVKFEMEEMIQLWLRDKNDDHKILKCAQQIENREQTIGDLVTALGPHLTNKDTKIRID
ACTLLSNVIHKLPKDCLNQGELESLVQFLCSRLEDHYTLQPVALSLLLQLSSADNLTGEN
ACSIITSVFKEVHIQTCMQHDRLKIFQILGTLLDIHTKDVITMGRDFLYQYIQVIDGEQD
PRNLLTIFQLTKNLIESSFPLFDLVEELFDVSSCYFPIDFNPAAAGKKSTITNLDLVSSL
RGVLASTKQFAQYCIPLMLEKLESDVESAKIDSLETLTACLGCYGKQELEKYLSSLWSDV
KREINQSSSEQIEKCCLTFLTSLLSNLSSWPVDQKSEKATDLKSFLDDVLEDCVPRLQAQ
SDDRSKWMAGHVVLACAKSSKKACSQIVTTVLPILLQNAQSKSASTTLAGQSVQQSALDN
LVKLTAVCGQFNFENHPVLKKKEEFFTILNELALKSEIEEQLKCIAVAGFASLLKLEILS
NVELTEIASLLLKMIKLKPESHLRGEVLSVAGYLSSQHPDVAKSHLIPCVMRRMEEGDDS
CFDVLASVCTHFDVLKLVLGFIMERIVNTQVDETSEPLLHACLESLQKMTSSSWVGNTEI
EYMALNLVLPLLKRCIEVTLELSVPEQCCANCHIFEDVSKECASLPILKSAAIVIRNVCQ
KLKPGKSTDLVIQLIASLYNNSKLSSLDIKSDVHFTPFHPKASPLQTRTLCFLPATICAL
HPNIEIPELAELETKLLNTCLHCTDQPSYVFAAKALSGLVNKYKKPSIPILEKLKSHFDT
DPNWSLKSEEEKMMILTLLIWICKALVLSNHPDSLIFIKNLLYWMGDDSVGEVAAAGFDI
ILRESNEVLSPSSHSTIRLMHKQRFFLLIIPEIVSSFKTSENKTQQTNILTALSHLIGHL
PKQVLMQHFTELLPLLTQALHTDNTQLLKSVLSTLFCFIQDTTEAMTAHLENLMKHFLRL
SKFKQDIDVRVKAVQCIGVVTLLPPIVILPFKNDIVRHLVSVLDDRKRDVRTEASKARSE
WFLVGT
NT seq 3081 nt   +upstreamnt  +downstreamnt
atggaaaaggtcaagtttgagatggaagaaatgattcaactctggttgcgtgacaagaat
gatgatcacaaaatactaaaatgtgctcaacaaattgaaaatagagaacagacgatcggt
gaccttgttacagcattggggccacacctaacgaacaaggatactaaaataagaatagat
gcctgcactttattatcaaatgtcatccataaattgccaaaggactgcctaaatcagggt
gaacttgaatctctagttcagtttttatgcagcaggctagaagatcattacaccctgcaa
cctgtagcgttaagtttgctgttacaactcagttctgctgacaatttaaccggcgaaaat
gcatgtagcataataacgtcagtgtttaaagaagtgcacattcaaacatgcatgcaacat
gaccgattaaaaatattccaaattcttggaactctcttagacattcacaccaaagatgta
attacaatgggcagagactttttgtaccaatatatccaagtaattgatggtgaacaagac
ccaagaaatctcctcaccatttttcaactgactaagaacctaattgaaagcagtttccca
ctttttgacctggttgaggaattgtttgatgtctcttcttgctattttcctatagatttt
aaccctgcagccgctggaaagaaatccactattactaaccttgacctagtatcttcccta
cgtggtgttcttgcttctaccaagcaatttgcccagtactgtatcccgttaatgcttgaa
aaattggaatctgacgttgaaagtgcaaaaatagattcgttagaaactcttactgcttgt
cttggctgttacggaaaacaagagcttgaaaaatatctaagttcgctttggtctgatgta
aaacgtgagataaaccagtcttcatctgagcagatcgaaaaatgttgtctcacttttttg
acttcacttctatcaaacttgtcaagctggccagttgatcaaaagagtgaaaaagccact
gatttgaaatcctttttggatgatgtattagaagattgcgtgccaagattgcaggcacaa
agtgatgacagatcaaaatggatggcaggccatgttgtacttgcatgcgcaaaatcttcc
aaaaaagcttgttctcaaatcgtgaccacagttttgccaattttgttgcaaaacgcgcaa
tcgaaaagtgcttcaacaacactggctggacaaagcgttcaacaatctgcccttgataac
cttgttaaactaacagcagtttgtggacagtttaattttgaaaatcacccagttttgaaa
aagaaagaagaattttttacaattttaaatgaacttgctttaaaaagtgaaattgaagaa
caactaaaatgtattgctgtggctggctttgcttctttattaaaacttgaaatcctatca
aatgttgaattaacggagatagcatccctgttgttgaagatgatcaaattgaaaccagag
tctcatcttcgaggggaagttttatcagttgctggttacctctcctcccaacatccggat
gttgcgaagtctcatctgatcccttgtgtgatgaggaggatggaagaaggagatgactca
tgcttcgatgtccttgcttccgtgtgcacacattttgatgtcttgaaattggttctgggt
tttattatggaacgcatagtgaatactcaagtagatgaaacaagcgagccattgctgcat
gcttgccttgaatctctgcagaaaatgaccagcagtagttgggtaggaaacactgagatt
gagtacatggcattaaacttggtgttgccgctactgaaacggtgtattgaggtaacactg
gagctttcggttccagagcagtgttgcgcgaattgtcacatatttgaggacgtttctaaa
gaatgtgcatcactgccaattctaaagtctgcggctattgttattcggaatgtgtgtcag
aaactaaaacctggaaaatcaactgatcttgtcattcaattaatcgcgtctttgtataac
aatagtaaactgagctcgcttgatatcaaatcagatgttcattttaccccgtttcacccc
aaagcttctccattacaaacaagaactttatgctttcttcccgccactatatgtgccctc
catccaaatattgaaatacctgaactggctgagttggagacaaagttgctaaatacctgc
ttgcattgtactgaccaaccaagttatgtatttgcagctaaagctttgtcaggtctggtg
aataagtacaagaaaccatcaatcccaatactagaaaagttaaaatcccattttgacact
gacccaaattggagtttaaaatcagaagaagaaaaaatgatgattcttactcttctgata
tggatatgcaaagctctggtgttatccaaccatccggactctttgatctttatcaaaaat
cttctctactggatgggagatgattcagtaggagaggttgctgcagcggggtttgatatt
attctaagggagtcaaatgaggtcctctcgccatcctcccactccaccatccgcttgatg
cacaaacaacgattcttcctccttattatcccggagattgtctcctcttttaaaacttcc
gagaacaaaacgcaacaaacgaacattcttaccgctctctcacacttaataggacatcta
cccaagcaggtgttaatgcaacatttcacggagttgcttcccttgctcacacaagctttg
cacacggacaatactcaactcttaaagtctgtgctttccactttgttctgcttcatacag
gataccaccgaagccatgacagcacacctggaaaacttgatgaaacattttctgaggtta
agcaaatttaaacaggatatagatgttagagtaaaggcagttcaatgtattggagttgta
acattacttccgccaatcgtcatcttgcctttcaaaaatgacatcgttcgtcacttggtg
tcagtattggacgatcgaaaacgtgatgtccgaacggaagcttcaaaagctcgttctgaa
tggtttctcgtcggaacttga

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