Ciona intestinalis (yellow sea squirt): 100179578 Help Entry 100179578         CDS       T01056                                  Name (RefSeq) protein dopey-1 isoform X1   KO K26680   protein dopey Organism cin  Ciona intestinalis (yellow sea squirt) Brite KEGG Orthology (KO) [BR:cin00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cin04131]     100179578 Membrane trafficking [BR:cin04131]  Endosome - Golgi transport   Others    Others     100179578 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Dopey_N TPR_DOP1 DOP1_C TPR_DOP1_M DUF7648 Motif Other DBs NCBI-GeneID:  100179578 NCBI-ProteinID:  XP_009858260 LinkDB All DBs Position 4:complement(888259..921373) Genome browser AA seq 2254 aa AA seqDB search MMSSEEQAMLDDSKYRQYMNAVEKCLRNFESSSEWADLISALGKLNKVLNSKFKVIPKKI TIGKRLAQCMHPALPGGVHLKAINVYDSIFKIIAPDLLKADLYIYSLGIFPLFSNASLQV RPVLLNLYETHMLPLGESLRTCLDGMILGLLPGLDEGTEHFERTDLLLERVCERVGAFDF YSAIWRCVLSSPSARLSAVQLVLRKFDRKRSTEDQLFIIGSDLEVMVTALCQSLQDNVVL TQRASLDVLILCCPLSNLPILYTDACILLEAALQCLLRRDMSLNRRLYSWLLGVDQSKQS SVSSLESSELPTFFEKYSKQMLIESLVNMLSRQTEKISSNTNLSVIEELYPLRILVSLLD KTEVGPVIIERVLLHVFRLLKAAVEHVKSSTNYRSTETSENDKRVLILGEISKTANLLLG VFEPTYIWKYLSNILISETDNEQCESTTSYSEICQFIHLLLSFVDLESYAEIQTVSLPTL MCHLTTIMTSNIGSLSNTQLYDGLTTCNVLLKHSQPLQPNITASETQTCETSGSSVSDCA KILLSFLECFVDLKLNHSRININNYLKILEADNEENETAKEASQTITTFIDSTEYETKSE ESMDLPSITVVDVFKLTCNLLLDFACFPVYCNGQKQLMDKDQINSSISTFPSWLQCLLWC ACGASNQLNSMFSVASTSISTILDLLALTQSISPDAASETCSGTISVKVLSPLTSSHVHI LTEESKFYKHITKQLWRVIGEAIMNRHHLTCVQLLLRLHSMCPDSRCENVLLADIIHHNK VIRFSAFEKFCRLWHLTRALTSQKINLQSGTHVKLFTRCLFSLVDQLSLNQGHLGSDPNL FQLDPGGESIGVTTASTWLRRSLEEKDLSRILEPFFMVLLHPCTHSSPKITKPNVSCNTT SLETVKSSGHEQMVEFKNCPPTEDKISKGEMEHQFTTHVTPTISSVTVDITTGKEKYKQL LLTLTTDAGHDLERQAREVVTNVIHKACQIVSSSAGFTAISTSTHGDTKPALKRPSKETN AIGPVLVYQEKFDAFRVSYALRSILNMFHAHPRLFAYTASTQPLATNKTTSGASMLQELL ARHLQSMGGESFYDDVTTRYPNIMILEVLIIISLRYIRSWGSERLISFESLHDVRSVACT LLVALLDQMTILARDNVVSSAPLTSSSVTSSATQSSQQFGAYVWSLLEKYKVNETVLLSL SATVDALHVVADGSYDYKTPNEDILLQLQSRHAESINSYELAFWWSGGEIARVKSFQSNL LSLVRSLLVFQYYLSDANTTTSLQDWQTHSKDSDPKYHPRLQISVQPLLSSALIRVLALQ MACDVHGEWLDFVTSSLQFLPHMLSEVTSPITLQLCRNLKDAATMYSMCSDHHAQLPQMP PDYVISSLKSLRTLSHFTLLLHASTHTLQHSMINTGHVLKADKASQLNSLNTSVALNQAN NVGLSALGSLFNVFSVSSSIKTQRSVEEQELSVEVTEARRVTLRNLPRILSCLVTVWHKV VSPQPTGNRKSKQHGRLHLDLNPCVAMGGSESVSRHVLQLLDPLAIQFGENLVSAFAIVW ERRDRTEAKKSIHWFPLPEPNIQQQQILDVACAIRSLQCDVILGVVKRVILQPNDFPLPS SNKRRKPFQESLLDFTLRFLQRQTSSAVRDAWPNLLSLVRECLALGPVVAPTNPSISGSN ATLSGKLSVRCHFFLLLLVSEYARRAAGSSDKKDQKDLQDICVKCIEACNAIVDCSLEHG GWLARRAPSVIPGPHQLKDSKHKLTESGSSVDLMDSKSRPETAPKTVTSDPGLATTRLEE TGSSNTSMLPQANNPNFIHSLHALNVLAQVLANLLDVIYGSEEKDKIVPVLTPVMTNVTP YLKNHSANNAPSYKAAVRLLSSVSGYQQTRRAWKREAFELLMDNDFFRMPLDCAIEWGNV VDHLMTHDATTFKELMVRIGLTRNAATGPSLNIFSNKEQELEQRAMLLKRLAFVIFSSDT NQYQRHLPEIQERLSESLKLHQVPAVQAQVFLCFRVLLLRVSPNNLQSLWPSIVTELVQV LSQLEQQLTLHSFENDSLRNSDFDNPTATSSGGGILFSGQTNISSVYSQEKWMAMYLSAC KLLDLILCLQPTQLCHFKLFRWSFVGEPGENVDDVYDDVTNSKPAEDGSTHNSTTNDREF VPHCVRIKRLLARKSTNGGRKLVNVEAMRPLLEMNRLTSLWQLQNFFNTLVEPHTMLAMH RTPNQFVPSNTKDSASTFRHIETILQKDFVESMT NT seq 6765 nt NT seq  +upstreamnt  +downstreamnt atgatgtcgtctgaagaacaagcaatgttagatgattccaaatatcggcaatacatgaat gcagttgagaaatgtcttcgtaactttgaatcatctagtgaatgggccgatctaatctct gcacttggaaaattaaacaaggttttgaactccaagtttaaagtaattcctaaaaagatt acaattggcaaacggcttgcacagtgtatgcaccctgcattaccgggtggtgttcatttg aaagcaatcaacgtttatgactctatttttaaaataattgcaccagatcttctaaaagca gatctatatatttatagcttgggaatttttcctttattttcaaatgcatcattacaagtt cggccagtgcttttgaatttatatgaaacgcacatgttgcctcttggagaatctctccga acatgtttagatggaatgatacttggtctgttgccagggttagacgaaggcactgagcac tttgaaagaaccgatctgttgctagagagggtgtgtgagcgtgttggtgcgtttgatttc tactcagccatctggagatgtgttctgtcttcaccatctgctcgtttatccgccgttcaa cttgttcttcgtaaatttgatcgcaagcgctctactgaagatcaactctttattattgga tcagatttggaagttatggtcacagcactgtgccaatcactccaagataatgttgttctc acacaacgtgcatcactggatgttttgatattatgttgccccctgtccaacttacccatc ctatacactgatgcttgtatactgttggaagcagctctgcaatgcttgctgaggcgagat atgtctctgaatcgacgcctatattcatggctgctaggtgtggaccaaagcaagcaaagc agtgtttcaagtttagagagctctgagttaccaacattctttgaaaaatattccaaacaa atgttaattgaatcacttgtgaatatgttgagcagacaaactgaaaaaatatcatctaat accaacttatctgtgatagaagaattgtacccacttcgtattctagtaagtttattagat aaaaccgaagttggtcctgtcattattgaaagagttctgcttcatgtatttagactttta aaagcagcagtggagcatgtcaaatcatcaacaaattatagatcaactgaaacatctgaa aatgacaaacgagttttaattttgggtgaaatatcaaagaccgcaaatctattgctgggt gtgttcgaaccaacatatatatggaaatatttatcaaacatattgattagtgaaactgat aatgagcagtgtgagtccactacatcgtattcagaaatttgtcaatttattcaccttctg cttagttttgttgacttggaaagttacgcagagatacaaacagttagtttgccaacttta atgtgtcacctgactaccattatgacatcaaacattggtagtctctccaacacacaacta tacgacgggttaacaacttgtaatgtcctacttaaacattcgcaaccactgcaacccaat atcactgcatctgaaacacaaacttgtgaaaccagtggctcaagtgtgtccgactgtgca aagattcttctttcatttttggaatgttttgttgatttgaaactgaatcattccagaatt aacatcaacaactaccttaaaattcttgaagctgataacgaagagaatgaaacagctaaa gaagcctctcaaacgataaccacttttattgattccactgaatatgaaacaaaatcagag gagagtatggatctaccatctatcacggttgttgatgtgtttaagttaacttgtaatctg ctgcttgactttgcttgttttcccgtatattgtaatggacagaaacaacttatggacaaa gatcaaataaattcgtctatttcaacatttcccagttggctgcagtgtttactatggtgt gcatgtggcgcctcaaaccagcttaattccatgttttctgtggcttccacttctatttct actatacttgatttgcttgcattaacacagagcatttcacccgatgcagcatctgaaaca tgtagtggaacaatttcagtaaaagttctttctcccctcacttcatctcatgtacatatc ctcactgaggaatccaagttttacaaacatataacaaaacaattatggagggtaattgga gaagccataatgaacagacaccaccttacctgtgtacaattattgttaagacttcattca atgtgtcccgactctcgatgtgagaatgttttacttgctgacattattcatcataacaag gtaatccgtttttcagcatttgaaaagttttgtagattgtggcaccttacacgtgcactc acctcacagaagatcaacttacaaagtggaactcatgttaagttattcaccagatgttta ttctcattggttgatcagttatcactcaaccaaggtcatcttggatctgatcccaacctc ttccaacttgatccaggaggagaatccatcggagtaaccaccgcatccacatggttgcgg agatcactagaagagaaagatctttcccgcattcttgagcccttcttcatggtcctccta catccatgcactcacagctcaccaaagattacaaagccaaacgtgtcatgtaatactacg tcattggaaactgtcaagtcatcaggtcacgaacaaatggttgaatttaaaaactgcccg cccactgaagacaagatatcaaagggcgagatggaacatcagttcacgacccacgttacc ccaaccatctcttcggtcaccgtggatattacaacgggcaaagagaaatacaagcagttg ctgctgacgctgaccaccgatgcagggcacgacttggagagacaagcacgcgaagtggtg accaacgtcatacacaaagcgtgccaaatcgtatcatcttccgccggtttcactgctata tcgacatcgacacatggtgataccaaacctgcgctaaagcgaccttctaaagaaacaaac gcaattggtcccgtcctggtctaccaggaaaaatttgatgcttttcgtgtgagttatgca ctgcggtcaatacttaatatgttccatgcccacccacgcttgttcgcatacaccgcctcc actcaaccactggcaacaaataaaacaacatctggagcttcaatgctgcaagaattgctt gcccgtcacctgcagtccatgggcggcgaatcattttatgatgacgtcacgactcgatat ccgaacatcatgatattggaagtattaataatcatctctttacgctacatcaggtcatgg ggttccgaacgcctaatctcattcgaatcattacacgacgttcgtagcgttgcttgtaca ttgcttgtcgcccttctcgaccaaatgaccatcctagcacgtgacaatgtcgtgtcatca gcgccactgacgtcatcaagtgttacgtcatcagcgacccaatcatcccaacagtttggt gcatacgtgtggtcattattggaaaagtacaaagtaaacgagactgtcttgctctcatta tcagccactgtagacgctttacacgttgttgctgatgggagttacgattacaaaacacca aacgaagatatattacttcaattacaaagtcgacatgcggaatcaatcaacagctacgag ttagcgttctggtggtcgggtggtgaaattgctcgagttaaaagttttcagtccaatctt ctttctcttgttcgttccttgcttgtatttcaatactacctcagcgacgctaacactact acaagcttgcaagattggcaaacacacagtaaagactctgacccgaagtaccacccccga ctacagatctctgtccaaccacttctatcctcagccctaatccgcgtccttgcactccag atggcgtgcgatgtgcatggcgagtggctagacttcgtgacgtcatcgctgcaatttctg ccgcacatgttgtcggaagtgacgtcacccatcacccttcaactgtgtcgtaacttgaaa gatgctgctaccatgtatagcatgtgtagcgatcaccatgcgcagttgccacaaatgcca ccagattacgttatttcgtcgctgaagagcctccgtacgttgtctcatttcacgttactt cttcacgccagtacccacacgttacaacactccatgatcaacacaggtcatgttctgaag gcggacaaagcatctcaactaaactcactgaacacaagtgtagcgttgaaccaagcgaac aatgttggtctctccgctcttggaagcctctttaacgttttctcagtcagcagttctatt aagacgcagcgaagcgttgaggagcaagaactatccgttgaagtaacagaagcaagaaga gttactttacgaaaccttccccgcatattgtcgtgcttagtcacggtatggcataaagtg gtctcaccacaaccaactgggaatcgaaagtcaaaacaacatggtcgtcttcatttagac ttgaacccgtgtgtggctatgggcggcagtgaatctgtatcaaggcatgttctgcaacta cttgatcccttggctatacagtttggcgaaaacctcgtcagcgctttcgccatagtgtgg gaaagaagggaccgcaccgaagccaagaagtccatacattggtttccactacctgaacct aacatccaacaacaacaaatccttgacgtggcgtgcgcgattcgatccttgcagtgtgac gtcatacttggtgtggtaaaacgcgtcatcttacaaccgaatgattttccattaccatca tcaaacaaaagaaggaagccatttcaggaatctctccttgactttacattacggttcctt caacgacagacaagttccgctgtacgtgacgcatggcccaaccttttatcattagtaagg gaatgccttgcacttggacctgtagtcgcccctaccaatccttcaatatccggctccaat gcgacactcagtggaaaattgagtgtacgttgccatttctttctcctcttgttagtatct gaatacgcacgcagggctgcgggttcttccgataaaaaggatcaaaaagatctacaggac atatgcgtgaaatgcattgaagcatgtaatgctattgttgattgttcacttgagcatggt ggatggttagctcgtcgtgctccatcagttatacctggaccccaccaacttaaggattca aaacacaagttgaccgagtcgggttcctctgtagatttaatggattcaaaaagtcgtcct gagacggcgccaaaaaccgtcacctcagatccaggtttggcgaccacacggttggaggaa accggttcatcaaacacgtccatgctaccgcaagccaacaacccgaacttcatacacagt ctacatgccctgaatgtattggctcaggtactggcgaaccttttagatgttatttatggc agtgaggagaaagacaagatagttcccgtgttgacacccgtcatgaccaacgtcacacct taccttaaaaaccacagtgccaataacgcccccagctacaaggcggctgtgcgcctatta tccagtgtgagtggttatcagcaaacaaggcgcgcttggaaaagggaagccttcgaactt ctgatggataatgacttcttccgaatgccgctcgactgcgccatcgagtgggggaacgta gttgaccacttgatgacgcacgatgcaactactttcaaagaactaatggttcgcatcggg ttaaccaggaacgcagccaccggtccttcactcaatatattttcaaataaagaacaagaa ttggaacagcgtgccatgttattaaagcgacttgccttcgttatcttcagcagcgacact aaccaatatcaacgtcatttacctgagatacaagaacggttgtcggaaagtttaaaatta catcaagttcctgcagtacaagcacaggtattcttgtgcttccgtgtcttactactacgc gtatctccgaacaacctacaatcattatggccgtcaattgtcactgaactggtgcaagtt ttgagccaactggaacaacaactgactctccacagctttgaaaacgattctctgcgtaat tcagacttcgataaccccacagcgacgtctagcggcggaggaattctgttttccggacaa acgaatatatcaagcgtttactcgcaagaaaagtggatggccatgtatctatccgcgtgt aaactactggatttaatattatgcttgcaaccgactcaactctgccattttaagctcttt cgttggtcgttcgtcggcgagccgggagaaaatgttgatgacgtatacgatgacgtcacc aattctaaacctgcagaggacggtagcacccacaactcgacaaccaacgatcgtgaattt gtcccacattgtgttcgaatcaagcgattactggctcgaaaaagcacgaacggtggtcgg aaacttgtcaacgtcgaagctatgcgtcctttgcttgaaatgaatcgcctcacgtcactc tggcaacttcagaattttttcaacactttagttgaacctcataccatgctagcaatgcat aggacgccaaatcagtttgttccatctaatacaaaagattcagcatccactttccgtcac atagaaacaatattacaaaaggattttgtcgagtcgatgacgtaa

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