KEGG   Ciona intestinalis (yellow sea squirt): 100179596
Entry
100179596         CDS       T01056                                 
Name
(RefSeq) telomerase Cajal body protein 1 isoform X2
  KO
K23314  telomerase Cajal body protein 1
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cin03032]
    100179596
   03400 DNA repair and recombination proteins [BR:cin03400]
    100179596
DNA replication proteins [BR:cin03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    100179596
DNA repair and recombination proteins [BR:cin03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   Other DSBR factors
    Others
     100179596
SSDB
Motif
Pfam: WD40_Prp19 WD40 Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_IFT140_1st Ge1_WD40 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_Vps41 GNVR WDR54 NifZ
Other DBs
NCBI-GeneID: 100179596
NCBI-ProteinID: XP_009859224
Ensembl: ENSCING00000004821
LinkDB
Position
8:518278..522331
AA seq 488 aa
MDTTVSDKTNHSKDSIIETMEKSTEPQPEPIGIEETPLQSPSNDGKINSDVTMQSYNEIT
IIPSLTTLNVPLVEDPALQPELNLISNTEIALDDPDTQINNSNGQVDNQHVPCQIKAENL
MCKMLAKSIDSPNGNYLKGCKWSPDGLCFLVNSNDCCVKLFNTPSLCIKQERLKDEDNLK
PCLKAVEPEIVYDFCWWPQMNSGDPATCCFATAAKDQPVHLWDAFTGELRASYIALNSVV
EIQAVHSLAFCPDGQQLLCGCKRELVLFYTDRPGSDFEKWSTCRKNSSKKQNNIISSVEF
GPDGTVFACGCYDGTVGLYSPMNGNMLEQFQAHKHGVTEIRFATDGIKLYSGARNEDLLK
CWDIRYLTQPVFEVTRKVTTNQRVYFDLVQQQGHNEELLVSGGTDGVVRFWDVTKSFPAP
CHTFTAHNDCVNGCSVHPYLPLLLTSSGQRKYPEPLESDDESEELLSMQGIAEENNVKVW
LLSNDPPL
NT seq 1467 nt   +upstreamnt  +downstreamnt
atggatacaacagtttctgataaaacgaaccattcaaaggattctataatagaaacaatg
gaaaaatcaacggaaccccaacctgaacctatcggaatagaagaaacgccattgcagtcc
ccttcaaatgacggaaaaattaattcagatgttactatgcagtcctataacgaaattaca
atcatacctagcttaactacactaaatgtcccattagtagaagacccagcgttacagccc
gaactgaacttgatcagtaatactgaaatagcattggacgatcctgatacacaaataaac
aattcgaatggacaagttgacaaccagcatgtcccatgtcagattaaggcagagaatcta
atgtgcaaaatgcttgcaaaatctatagactctccaaatgggaattatttaaagggctgc
aaatggtctccagatggcctgtgttttcttgttaacagcaatgactgttgtgtaaaacta
ttcaacacaccttcattatgcataaaacaagaaaggttgaaagatgaagataatttaaag
ccatgcctgaaagctgttgaaccagaaatagtgtatgatttttgttggtggccacaaatg
aattctggggacccagcaacttgctgttttgccacggcagcaaaggatcaacctgtacat
ttatgggatgcctttacaggagaacttcgggcatcttacattgctttgaactcggttgtg
gagattcaggctgttcatagccttgccttttgtccagatggacaacaactgctttgtggt
tgtaaaagagagcttgttctattctacaccgaccgccctggctcagattttgaaaaatgg
agcacttgtagaaagaactcatccaagaagcaaaataacattatatccagtgttgaattt
ggaccagatgggacagtgtttgcatgtggttgttatgatggaactgttggcctatacagt
ccaatgaatggaaatatgcttgaacaattccaagcacataaacatggtgttactgaaatt
aggtttgcaacagatggaattaaactatatagtggtgctcgcaatgaagacttattgaag
tgttgggatattcgatatttaacacaaccagtgtttgaagttacaagaaaagtaaccacc
aaccaacgcgtgtactttgatttggtccaacagcaggggcacaatgaagaattacttgtt
tctgggggtacagatggagtcgtaagattctgggacgtaacaaaaagctttcctgcacct
tgccatacttttactgcacataatgattgtgtgaatgggtgtagtgttcacccatattta
ccattacttcttacttcatcaggacaaaggaaatatccggagccacttgaaagtgatgat
gagtcagaagaactgctatcaatgcagggtatagcagaggaaaataatgtcaaagtatgg
ttgctatccaatgacccacccttatga

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