Ciona intestinalis (yellow sea squirt): 100179612
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Entry
100179612 CDS
T01056
Name
(RefSeq) tetratricopeptide repeat protein 28
KO
K24936
tetratricopeptide repeat protein 28
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cin03037
]
100179612
Cilium and associated proteins [BR:
cin03037
]
Motile cilia and associated proteins
Other motile cilia associated proteins
100179612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_1
TPR_2
TPR_7
TPR_8
CHAT
TPR_10
TPR_MalT
TPR_6
TPR_16
TPR_17
TPR_14
TPR_11
TPR_EMC2
Motif
Other DBs
NCBI-GeneID:
100179612
NCBI-ProteinID:
XP_026690437
Ensembl:
ENSCING00000022449
LinkDB
All DBs
Position
5:complement(1112071..1124915)
Genome browser
AA seq
1817 aa
AA seq
DB search
MESPHKETCPSPQDIAKSAKTACSNKQFELADQLYTEAISHQPNNAILYCNRSVVKIHLK
KYEDALQDANTSIRLNRMHAKGYFHGGVALKHLGHTYSALVMYSNGMVLDSKNRKFLKEI
IETSMLPPLNSYLSPVMTQLKEMNLNHNPFVIISVVGQALLAQKETQRAVEVLECAVAVG
TCSLKLKGSVYSTLSNALWTLGHFSRAIHYMTEDLKVAELLMDAHGECRSLENLGFAFYT
QRRYQEAFEVYTKQLGIAKILKNKIQILSACNGLERIYAGLSSQGPNSPKSSHTNVSLPL
RKSDNGFLFNEVPEENNEQDTLSLAQYQEKLEILLKSPGADKYEEAQLYCDIARAYKNVK
RYDKQIESLKKSAIISRELFDVNSESRTLMCLAHAAKCADDTSVSKEAYERMLEISHETK
DILLQGFASSHLGVLHHQLENYEVAIKYHHKYLQIATNVQDISSQGHAHGNLGNSYNALG
FYEKAAHHQLKHVEISHKILDEQVECSAHGNLAVAYQALKQTDKALEHFRLQLELSRRIK
SCVNESVALMNLANCFCTTAMFSEAVEMYKGYLQLSVRVPDKHGEGRALYNLGYAYFSLG
DHASAVDCYNECISVASQCNDDVTMARAFCNLGLAKKDLGDLDAALEFQKKFLETSLEIR
SARGVFKALGNIGDLYFERKELDDAVKFYQQQLETAQENKNPVLTAQACASLAIALRLMG
EKEKAVEIHKKEIGLYSSVIKDSKNEEEARKRLNVTLAETLQICDEAKSGVNKEVAKSEA
EWVAEAQAWRNLGITYTNMNKMEQALECFTNQMLSLRMVSSVTVSVEKVNSFCYLGDTCH
AMEKYKEAIGHFKYALTLAESLKHPKLENQACKGLFKAYKKNGEFEFAIQYCEQSLVYCQ
KLRDQKWLASVYGELGNLYSEVCEYDKAVEALMLQVKVGTELESNEILADSASDLGFIYY
STANYEKALEFHYLDLEISKKSKNQTCQGRAHKNLALTYEANKNYAASMFHYEQHLFIAE
EQSDTLAKVEALHGIGRCLLMQGNGDLSRAILLLQQSMLIGRELNIECLIASIACDLGKA
LWVSNGSETATSYLNQAFIAGKTDCFNMLANEEKNSVVFRGKILKTYEKLLQYASVLLCN
LVENNLNSEAFQLACEVSALPEKVFSHKNTSPHTISNSLLLKSTQSNDGGNNLTAFFTVT
AGTLFYWLLKDGNLCLSGHKPLYTEDDDNILANLIFKLRENVGVEITSDGKSLEGNMSKE
SSLYTELLQLHSKFNNQSGFLKTGKGLIFNSTVRDIKKYNSAKNPAFLLYELLFSDMEKE
MTSAVEKSPLATFTLHIDGDLLLLPFPLLKKNNGDKFLYEKFQLTVLPISSTKTPSSSVF
QCCPARALVSGNSGLKISRHDFSPAAAEAETSLVSEILRVEPLLGNNATLQNVLEKLNRE
QYECIHLACPFFTLPCGVVMEKSKVLEKDQTTEDDQFVLTDRNILNANLTQTKLVVLASP
YGLTISANISNWSAAVFTILRTFLTAGTKAILLPLWPVPETACKLFYKTFYGYLINGCDS
GKALVHSMSSLRNSAQFQHPSFWAGFALFGQPAKIYPQDLPTTFALTKLLQGNPLHLKDT
IKLCSHMLGKALSEKVASGSSSPVPIYTTQESVAAKVHNTGGWRELFSAAGFQLRNKLED
LPAAVVFPQSQPHVQESNERVLKTLKPFANLPCAILETLGQLMLSPYTSQAILLCMKDLL
ASVNNGLAKNFSFNRKLWQTDGCSQIFHLLGYKVISIEEDQVLLHCDEQLSKTKLQNTIQ
ALTVLQLHTEKVESVTP
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atggagtcaccacataaagaaacatgcccgtcacctcaagatatcgcaaaaagtgcaaaa
accgcatgttcaaataaacaatttgagctagcggatcagttatacaccgaagcgataagt
catcaaccaaataatgcaatcttatattgcaatcgttctgttgtgaaaatccaccttaag
aaatatgaagacgcgctacaagatgcaaatacttcaattaggttaaaccgtatgcatgca
aagggttactttcacggaggtgtggctctcaaacatcttggtcatacttactcagctctt
gtgatgtacagcaatgggatggtgctggattcaaagaatcgaaaatttctcaaagaaata
attgagacttcaatgttaccacctcttaattcttatctttcacctgtgatgactcaatta
aaagaaatgaatttaaaccacaatccatttgtgataatatcagtggttggacaagctttg
ttggctcaaaaagaaacacagagagcagtagaagtattggaatgtgctgtagcagttgga
acttgtagtttgaaactgaaaggttctgtttattctacgttaagtaatgctttgtggacg
cttggccacttcagcagggccatacattacatgactgaggatttaaaggtggctgagtta
ttaatggatgcacatggagaatgcaggtcattggaaaatcttggctttgcgttttataca
caacgtcgatatcaagaagcatttgaagtttacacaaaacaacttggaattgcaaagatt
ttaaaaaacaaaatacaaatcttatcagcttgcaacggtcttgagagaatatatgctgga
ctgagcagccagggacctaattcgcccaaatcaagccacaccaatgtctcattgccactg
aggaaaagtgataatggtttcttatttaatgaagtacctgaagaaaataatgagcaagac
actttatcgttggcgcagtatcaagaaaaacttgaaattttgttaaaatcacctggtgct
gataagtatgaagaggcacagctgtattgtgatattgcaagagcttataaaaatgttaaa
aggtatgataaacaaattgaaagtttgaaaaaatccgcaataataagcagggagttgttt
gatgtcaactctgaatcaaggacactcatgtgtttggctcatgcagcaaaatgtgcagat
gacacttcagtttccaaggaagcatatgaaagaatgcttgagatatcacatgaaacaaaa
gatattttacttcaaggattcgcatccagtcatctaggtgtcttgcatcaccagttggaa
aactatgaagttgccatcaaataccaccacaagtatttacaaattgcaaccaatgtacaa
gatatctctagccaaggtcacgcccatggaaacttaggaaactcttataatgctctaggc
ttctatgagaaggcagcccaccaccaactaaagcatgttgaaatatcacacaaaatactt
gatgaacaagttgaatgttcagctcatggtaatttggctgtggcatatcaagctttaaaa
caaactgataaagcattagagcatttcaggctccaactagagttatcaaggcgaatcaag
agttgtgtgaacgaatctgttgctctgatgaatcttgccaactgtttctgcacaactgct
atgtttagtgaggctgtggaaatgtacaaaggttatctacaactgtcagtacgcgtacct
gataaacatggggaaggtagggcactttataacctcggttatgcatacttttcgctggga
gaccatgcttctgctgtggattgttacaatgaatgtatttccgttgcatcacaatgcaat
gatgatgtcacaatggcaagagcattttgtaatctcgggttggcaaaaaaggacttagga
gatttggatgcagcgctggagtttcagaaaaagtttctcgagacttcgcttgaaatacgg
agtgcaaggggtgtgtttaaagcgcttggtaatattggggatctttattttgaaagaaaa
gaattagatgatgctgtcaagttttaccagcaacagttagaaactgcacaagagaataaa
aacccagtgttgaccgcgcaagcatgtgcatcgcttgcgattgctctgcgcttaatggga
gagaaagaaaaagcggtggagattcataaaaaagagattggtttgtattccagtgtgatc
aaagattctaaaaatgaggaagaagcaagaaaaaggttgaatgtgactctcgctgaaact
ttacagatttgtgatgaagctaaaagtggtgtgaataaggaagttgctaagtctgaagct
gaatgggtggcagaagctcaagcgtggaggaaccttgggatcacatacaccaacatgaat
aagatggagcaagcattagaatgtttcacaaaccagatgttatctttgaggatggtttca
tctgtgacggtttctgtggaaaaagttaattcattttgctatttaggtgatacctgtcat
gcaatggagaaatacaaggaggcaatcggccattttaaatatgcattaacactagcagag
agtttaaagcatcctaagcttgaaaatcaagcttgtaaaggcttatttaaggcttataaa
aagaatggggagtttgaatttgcaattcagtactgtgagcaaagtttggtgtattgccaa
aagctgcgggatcaaaaatggctggcttccgtgtacggagaactgggcaatctttattcg
gaagtttgtgagtatgataaagctgtggaagccttaatgcttcaagtgaaggtgggaact
gagttggaaagtaatgaaatactggctgattctgcttcggatttaggttttatttattat
tccactgcaaactatgagaaagccctggagtttcattatttagatttagaaatttcaaaa
aaaagtaaaaaccaaacttgccaaggcagggctcataaaaacctggctctaacttacgaa
gcaaacaagaattatgcagcttccatgtttcattatgaacaacatctgtttattgctgag
gaacaaagtgatactcttgccaaggttgaagcattacatgggataggaaggtgtctttta
atgcaaggaaatggagacttatctcgtgctatactacttctacagcaatctatgctcatt
ggaagggaattaaacattgaatgtttaattgcatcaatagcttgtgaccttggtaaagca
ttgtgggtctctaatggttcagaaactgctacttcctatcttaatcaagcatttattgct
ggaaaaactgactgctttaatatgttggcaaatgaagagaaaaattctgtggtttttcgt
gggaagattttaaaaacatacgagaaactgcttcagtatgcatcagtgttgttgtgtaac
ttggtggagaataacctaaactctgaagcctttcaacttgcatgcgaagtttctgcactc
cctgaaaaagtgttttcacacaagaatacttcaccccacaccataagtaactcactgttg
ttgaaatcaacacaaagcaatgatggtgggaataatttaacagcattttttactgttact
gctgggacgttgttctattggctgcttaaagatggaaatttgtgtttgtctggtcataaa
ccactttacactgaagatgatgataatatacttgcaaatttgatatttaaactcagggaa
aacgttggtgttgaaattacaagtgatgggaaatccctggagggaaatatgtctaaagag
agttcattatacactgaattgctacaactacattcaaagttcaataatcagtcgggtttt
ttaaaaactgggaaagggttgatatttaacagcactgtaagggatatcaagaagtataat
tctgctaagaatccagcgttcttattgtatgaattacttttcagtgatatggaaaaggaa
atgacctcagcagttgaaaaatctccattagctacattcacattgcatatagatggagac
ttacttctcctcccatttccacttctgaaaaaaaacaatggtgataaatttctttatgaa
aagtttcagttaacagtgttgccaatttcttcaacaaaaacaccttcttcatctgttttc
caatgttgcccagctcgcgctttagtatcgggaaactctggactaaaaatttcaagacat
gatttttcaccggctgctgcagaagctgaaacttctcttgtgagtgaaatacttagagtt
gagccattattaggaaataatgcaactctacaaaatgtactggaaaaactaaacagagaa
caatatgaatgtattcacttagcttgtccattttttaccttaccctgtggggtggtgatg
gaaaaatccaaagttttggaaaaagaccaaactacagaagatgaccagttcgtactaaca
gatagaaatatactgaatgcaaatctgacccaaacaaaactagtggtgttagcatcacca
tatggccttaccatcagtgccaacatatctaactggtcagcagctgtatttacaatccta
cgaacattccttacagctgggactaaagcaattctgttaccattatggccagtgcctgaa
acagcttgcaagttgttctataaaacattttacggatatttaataaatggttgtgactct
ggcaaggctctggtccactccatgagtagtttacgaaacagtgcacagtttcagcaccct
tccttttgggcggggtttgctttatttggtcaacctgcaaaaatttaccctcaagattta
ccaacaacttttgcgctcactaaactacttcaaggcaatccgttacatctgaaagacaca
attaagctttgctctcacatgttggggaaagcactgtcggaaaaagttgcttccggttcc
agttcccctgtcccaatatacacaacacaggaaagtgtggctgcaaaggttcacaacaca
gggggttggagagagttattttcagctgcaggttttcaactgagaaacaagttagaagat
cttccggctgctgttgtgtttccacagtcacaaccacatgtacaggaaagcaatgagagg
gttttaaaaactttgaaaccatttgccaatctaccttgcgcaatacttgagacattgggc
caactcatgttgtctccatatacatcacaagctattctgttgtgtatgaaagacttgctt
gcatcggtgaataatggcttggcaaagaacttcagtttcaatagaaagctatggcagaca
gatggttgttcgcaaatctttcatttgcttgggtacaaagtgatttcaattgaggaagat
caagtattgcttcactgtgatgaacaattatcaaaaacaaagttacaaaacacaatccaa
gctttaactgtgttgcagttgcacacagaaaaagttgaatctgtcactccttaa
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integrated database retrieval system
