Ciona intestinalis (yellow sea squirt): 100179662
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Entry
100179662 CDS
T01056
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100179662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100179662
03009 Ribosome biogenesis [BR:
cin03009
]
100179662
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100179662
Spliceosome [BR:
cin03041
]
Complex A
U2 snRNP components
U2 related factors
100179662
Complex B
100179662
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
100179662
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
90S particles
Helicases
100179662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
AAA_22
AAA_19
SRP54
ABC_tran
ResIII
nSTAND3
Flavi_DEAD
AAA_7
AAA_25
Helicase_C
TsaE
T2SSE
AAA_30
Roc
AAA_16
AAA_33
AAA_29
Motif
Other DBs
NCBI-GeneID:
100179662
NCBI-ProteinID:
XP_026694330
LinkDB
All DBs
Position
Unknown
AA seq
462 aa
AA seq
DB search
MSKRHRLDIGDDRKKRSDRDRDDDRRRDERDRKYRRDEKTSSKLVSPAQVPTNPLTGLPF
TQKYYDILKKRLGLPVWEYKEEFMMLLAKHQTIVLVGETGSGKTTQIPQWCTEYVRANHP
VTSRKAVACTQPRRVAAMSVAQRVAEEMDVMLGQEVGYTIRFEDCSSQKTCLKYMTDGML
LREAMADPLMERYDFIILDEAHERTLSTDILLGVIKEVCKQRPDLKIIVMSATLDAGKFQ
QYFNSAPLLTIPGRTHPVEIFYTPEPERDYLEASIRTVVQIHLCEEDEGDILLFLTGQEE
IDEACRRIKSEIDNMGPEVGDLKVIPLYSTLPPAQQQRIFEKAPPKKENGAIGRKLVVST
NIRTLTSTTQQVAHLERTGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTTKNYIRT
NTDIKPDWLVKIAPQYYNMGNFPQCEAKRQLERIIARMGAQT
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgccatcgtctggacatcggggacgaccggaagaaacgatcggaccgtgac
agagatgatgacagaagacgagatgagcgtgatcggaaatatcgccgagatgaaaaaact
tcatccaagctggtgtcgcctgcgcaggtacccaccaaccctcttactgggttaccattc
acacagaaatattacgatatattgaagaagaggttgggcctccctgtgtgggaatacaag
gaggagttcatgatgttgttggccaaacatcaaactatcgtgttggttggggagactggc
tcagggaaaactacacagatcccacaatggtgcacggaatacgttcgtgccaatcacccc
gtgacctccagaaaagccgtggcgtgcacccagccgcgacgtgtagctgcgatgagcgtg
gcacaacgtgtagctgaggagatggatgtcatgttggggcaggaagttggatatactatc
aggtttgaggattgttcgtcacagaaaacatgtttgaaatatatgacggacgggatgtta
ctgagggaggccatggccgatccattgatggaacgatacgacttcatcatcctcgacgaa
gcgcacgagaggacgttatccaccgatattttgctgggggtgatcaaggaagtttgcaaa
caacgacccgatcttaagattatagtgatgagcgcaacactcgacgctggaaagttccaa
caatactttaactccgcccccctcctcaccatccccggtcgtacacaccccgtggaaata
ttctacaccccggaacccgagcgtgattatctcgaagcttcgatacggacggtggttcaa
atacatctgtgtgaggaagatgagggcgatatattgttgtttctaactggacaggaggaa
atcgatgaagcgtgtcgacgtatcaaaagtgagattgacaacatggggcctgaggttggg
gaccttaaagtgatccctttatactcgacgctcccccccgcccaacaacaacggatattc
gagaaagctcctccaaagaaggagaacggcgccattgggaggaagcttgtagtttccacc
aacatccgcacattaacatcaaccacacaacaggtggcacacttggagcgaaccggacat
tacttaaccgtgaaagacaaccaggtagttcaacttcacccctctacgtgtcttgaccat
aaacctgagtgggttctctacaacgagttcgttctcacaacaaagaattatattcgaaca
aacacagatataaaaccagattggttggttaagatcgccccccaatactacaacatgggg
aacttcccccaatgtgaggctaaacgacaacttgaacgaattatcgctcggatgggagcc
caaacataa
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