Ciona intestinalis (yellow sea squirt): 100179760
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Entry
100179760 CDS
T01056
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100179760
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
100179760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MID_MedPIWI
Med13_C
Med13_N
Motif
Other DBs
NCBI-GeneID:
100179760
NCBI-ProteinID:
XP_009860078
LinkDB
All DBs
Position
10:4767798..4786075
Genome browser
AA seq
1835 aa
AA seq
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MANSSTVANGARLDDCHSSVFSLADLSGIKWHRYSSISPGLADDPVLAAFTKCLALDILA
VWRKSSKKSPMQHGLPQEGIERELWIFWWGEEPNIDEISQQRGLNDIGRGSWDEGLTYEC
RTLLFKAIHNLVERCLLNENFVRIGRWFVKPLNKDNEEDISDRFSFSFSFFLHGESYVCT
TIEIAKHQPLERLTYQHFQHVTSSTNNSVVLAPYGLAATLTGTAYRNPHEPTVKKLLEEW
KPFYPMSTSDDFSMGDLCDDETEDDNIPVPPVVEVVIAGVQMNYPSHYILVPVEDTGLNS
SMFNSFQGSNMKRSSVNDKIKPTNGRSPARMETNYDKGNLGPPSVASISDQIHGPQSVGS
SLFSPASAKPSPNKNTVVPVPGYIQQQQRPPNQPLPSNIIKRICLSSNKTQSNQETNNFN
SNFNSSEDINETKWEFTDSFKDIRCRQLPSRPYLPLDGRHSAKLDRQQRSRPNTPFHHRT
HENEAQNIETQSNIILPPHSRPSVLINGPTEFMGTPQTFCPVKLEPTPSPSNLGDKFYQP
KANYELRNQTPQPFIPPPQEQWTNLDQNNLISTNQTYEVDDVEIKRTVMNWKTYKLPITS
MVDHKPKPPMLVCDNLDNRGYSFSHNNTSLSETALLYSCPTRKRLKVEETNEKSLLPCKQ
ENPYYPHDVNAQQVTFGTVKSELAGMLVQDPYAFDDELDDATTTNGVAGLSDIILNKNHN
QVIPLNRLPSSLGFEYGDGMSNEQDTVLTGRSQLEALLTQNTTSPSNKQPIHASKGSNLS
NVIAAKSLKSNSDLDFSMDDLTHMFDEEEEGGAPTPPEEGEESNYKKMNHSIKTSTTHAA
TDLQRMFPTPPSMEQCQAFSPESRIPIPNSVVAMDDTTPIIPTNEHQVIYSSEKLETDKL
LQDELPLLPTSYEMQTSACNKIKQHPTPTLYQPIKCLTTQLPLPTLSYTPAWQLPVQLPP
DPSFILPTMPINEYINNAPVTPATPGVSFTPGTPSRSSVRTPASVQPTPSPVTFSVPTPR
TPGRSGIRSVDPLESPASSFATPNSHLTSKGMYTDQHGNAAIFMNLLLSDSVLNLFRDRS
FDQCALCVCNSNINGADIEMGCLPALADQEAQFRCNCGFSAVRNRAASVGNGLFLEDELE
VVGAKFENEIIHARCRTSNYLPSDGETKRNSLGKPIDKAENVEELLQLAMEYSASPFTTL
ELCKDLDSNNFTAFDEDNMVVKHDICEACALALCGSLLAMEHPTKLDADSIINPIHQWKD
TRSEVYEFAGGFDVYHLLVSLKPVLQDAVQRKRTSRTFGTTQHVKGPLTWREFCKEAGKN
AEPQSIPSFVVGYNHDWVCISPESLRYWEKLYFEPYSSPRDVGYVVVCPDGDNLVSSAKV
FFKELSSLYESSRLGKFKAINKVLKDGGILKIGKNSSKVSHLPLDDWFEQLQQTLNSTSD
NLVGNENVDKLLLYARECLHSLGPLLEAEQSLEINSLHVREGRNRMQQSLNRNAPISNSI
NNIGRSPAQMQSNPTAVALKDTRPVYHPSYNASTACSIVVYLLDPFKNSASRGLWHCFRI
LQKSLPKPIRDHIIFQIVPIEHVLRVSSPNTRQSFVHVVRSLSFSTFAQCRRNLLHEVKV
RSMTGFGPAASDKRYLQENNHNVLNETRLYTPPYVLSVPREGNQINCKHENPPNILFVSY
CVSHDQKFVLASATDQCGELLETCCINIDVPPRRLSVSRKHRVSVRSEAIEKLWKFCVTT
VSRYSTTTWRIVVGRLGRLSHGEIRDWGKHLHRRSLLSCTRRLSCKQCKLQQKSESGFII
SACLTSLEPDGALMIMPGDIMIYLWWYYAIFMGIF
NT seq
5508 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattcaagcacagtcgcaaatggagcaagattagatgattgccattcttctgtc
ttttcattggcggacctcagcggcatcaaatggcatcgatattcctccatttcaccgggt
cttgcagatgatcctgtacttgctgccttcacaaaatgtcttgctcttgatattttagct
gtgtggcgaaaatcaagcaaaaaatcccctatgcagcatggcctaccacaggaaggaata
gagagggagttgtggatattctggtggggtgaggagcctaatattgatgaaatatctcaa
cagagaggactgaatgacatcggtcgaggtagttgggacgaagggttgacttatgagtgc
cggactttactttttaaagcaattcataaccttgtggaaagatgtctactcaatgaaaat
tttgttcgaattggtcgttggtttgttaagcctttgaacaaagacaatgaagaagatata
agtgacagattctcgttttcgttttccttctttttacacggagagagctatgtctgtaca
accatagaaatagcaaaacatcaaccacttgagcgactaacgtaccaacatttccaacat
gtcacatcatcaactaacaattccgttgtgttggctccatatggtttagctgccacttta
accggcaccgcgtatcgtaacccacacgaaccaactgttaagaaacttctggaagaatgg
aaacccttctatcctatgtcaacatctgatgacttttccatgggcgatttatgcgatgat
gaaacagaagatgacaatataccagttcctcctgttgtcgaagttgttatcgctggtgtt
caaatgaattatccatctcattacatcctcgtgcctgtggaagacactggattaaactct
tccatgtttaactcgttccaaggatcaaatatgaagagatcatctgttaacgacaaaatt
aaaccaactaatggtcgttcaccagcgaggatggaaacaaattatgacaaaggaaacctt
ggtccaccatctgtggcaagtataagtgaccagatacatggaccacaatccgttggttca
agtttatttagcccagcttcagcaaaaccaagtcctaacaaaaacacagtggtacctgtt
cctgggtatatacaacaacaacagcgaccacccaatcaacccttaccatcaaatatcatt
aaaagaatttgtctaagtagcaacaaaacgcaaagcaaccaagagacaaataattttaac
agcaatttcaattcaagtgaagatattaatgaaacaaaatgggaatttactgattctttt
aaagatataagatgtcgacaacttccctctcgtccatacttacccttagatggaagacac
agcgcaaagttagatcgacagcaacgatctcgtccaaacaccccttttcaccatagaact
cacgaaaacgaagcgcaaaatatcgaaactcagtcgaacattatactaccccctcactcg
cggccttctgtgttaataaatggccccacagagttcatgggtacccctcaaacattctgc
cccgtgaaacttgaacccacaccctccccaagtaacttaggggacaagttttaccaaccg
aaggccaattacgagttgcgtaaccaaacacctcaaccgtttatacccccaccccaggag
caatggacaaatttagatcagaataatttaatttcaacgaaccaaacttatgaagttgat
gacgttgaaattaaacgaacagttatgaattggaaaacatacaagttacccataacatcc
atggttgaccacaaacctaaacctcccatgcttgtatgtgataacttggacaaccgtggt
tattccttctcacataacaacacctcattatctgaaacagctttgttatattcctgtcca
acaaggaaaagattaaaagttgaagaaacgaatgagaaatccttattaccatgcaagcaa
gagaacccttactatccccatgatgtaaatgcacagcaagttacttttgggacagttaaa
agtgagttagcaggcatgttggtacaagatccgtatgcgtttgatgatgaattagatgac
gcaacaaccaccaatggtgtggcggggttatcggatattattctcaataaaaaccataac
caagttattccattgaatcgactgccaagctcacttgggtttgagtatggagatgggatg
agtaatgaacaagatacagtattaacgggtcgtagccagttagaagcgttattaacacaa
aacacaacgtcacccagcaataaacaacctattcatgcaagcaaaggtagcaacttatcg
aatgttatcgcagcaaagtcactaaagagcaattctgacttggacttctccatggacgac
ctcactcatatgtttgatgaggaggaggaaggaggagctcccactcctcctgaggaggga
gaggagagcaattataagaagatgaatcattccatcaaaacatcaactacacatgctgca
actgaccttcagcgtatgtttcccacccctccctccatggagcaatgccaagccttctcc
cctgaaagtcggatacctattcctaactcagtggttgctatggacgataccacgcccata
ataccaaccaatgagcatcaagtgatttattcaagcgagaaactagagacggataaatta
ttacaagatgaactaccgttgcttcctacttcatatgagatgcagacttctgcatgtaac
aagataaaacaacatcctacaccaacgttgtaccaacccataaagtgccttaccactcaa
ctacctctacctacattatcatataccccagcgtggcagctccccgtccaactacccccg
gatccttcgtttattttacccacaatgccgatcaatgaatacatcaacaacgcccccgtc
acaccagcgacacccggtgtcagttttacccctgggaccccgagtcgttcatccgtgcgg
accccggcctccgttcaacccactccttcgcccgtaactttctccgtacccacaccgagg
acccctggcaggtccgggattcgaagcgttgaccccctagagtcccccgcgtcgtcattt
gccacccctaactcccatcttacctcgaaagggatgtacacggaccaacacggcaacgcc
gcgattttcatgaaccttttactctccgattcagtgttgaatttattccgtgatcgttcg
ttcgatcagtgcgcgttgtgcgtttgcaactctaatattaacggggctgatattgaaatg
ggttgcttgcctgcacttgctgaccaagaagcacaatttcgttgcaactgtggtttcagt
gctgtgaggaaccgagcagcatccgttggaaacggactcttccttgaagatgagcttgaa
gtggtcggagcaaagtttgagaacgagatcattcatgctcgctgtcgaacatctaattac
ctaccatcagatggagaaacaaagagaaactcgttgggaaaaccgattgataaagcggaa
aatgttgaagaactgcttcagttagccatggagtatagtgcttcaccttttactacgttg
gaactttgtaaagatttagattcaaataatttcactgcatttgatgaggataatatggtt
gttaaacatgacatatgtgaagcttgtgcgcttgcattatgtggtagtttacttgccatg
gaacatccgacgaaacttgatgcagattccatcattaacccaatacatcagtggaaagac
accagatctgaagtttatgagttcgctggtgggtttgacgtttaccacttgttagtttcg
ctcaaacctgttctacaagacgcagtgcaacggaaacgaacttcaaggacattcggaacc
acacagcatgtgaagggacctctcacttggagggagttttgtaaagaagcaggaaaaaat
gctgaacctcaatctattccttcatttgtggtcggttacaaccatgactgggtatgtatt
tcacccgagtcgctccgttactgggagaaactatatttcgagccttactcctcgccacgg
gatgtggggtacgtggtggtgtgccccgatggtgataatcttgtgtcttccgctaaagtc
ttcttcaaagaactttcttctttgtatgagtcgagtagactcggaaaatttaaagcaatc
aacaaagtattaaaagatggaggaattttaaagattgggaaaaattcttccaaagtttcc
catcttcccctggatgattggttcgaacaattacaacaaacattaaattcaacgtcggat
aatttggttggaaacgagaatgttgataaattgttgttgtacgcaagggagtgtcttcat
agtcttggtccattattagaagccgaacaaagtcttgaaatcaactctttacatgttcgt
gagggaagaaatcgaatgcaacaatcattgaatagaaacgcacctatctccaacagtatt
aataatataggaaggtctcctgctcagatgcaaagcaatccaacagcagtggctttaaaa
gacacgcgacctgtataccatccatcgtacaacgcatcaactgcttgcagcattgtggtt
tatctgctcgatccattcaaaaattcggcctcgcgtggattatggcactgctttcgaatt
ctacagaaatcgctgccgaaaccaattcgtgatcacatcatatttcagattgtcccaatt
gagcatgtgttgcgcgtgtcatcccccaacacccgacaatcattcgtgcacgtcgtgcgc
tccttgtccttcagcacgttcgcgcaatgtcgccgaaatcttttgcacgaagtcaaagtt
cgctccatgacaggtttcgggcccgctgcttcagataaacgttatttgcaagaaaacaac
cacaatgtattaaacgaaacccgtttatacactccaccatatgtactttctgtaccaaga
gagggaaaccaaataaactgcaaacatgaaaacccccccaacatattgtttgtctcatac
tgtgtgtcacatgaccagaagtttgtccttgcatcagccactgaccagtgtggggagctg
ttggagacttgctgcatcaatattgatgttcctcccagacggttgtcggtttcacggaaa
caccgggtgtcagtgcggagcgaagcgatagaaaagttgtggaagttttgtgtgaccacg
gtatcgagatattcaaccacaacgtggaggattgtagtgggaaggttgggaagattaagt
catggagagatacgagattggggaaagcaccttcaccgtcgtagtctattatcatgcact
cgaaggctttcatgcaaacaatgtaagttacaacagaagagtgaaagtggtttcattata
agtgcttgtctcacttcactcgaacctgatggtgcgctcatgataatgccaggtgatatt
atgatatatttatggtggtattatgctatttttatggggatattttga
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integrated database retrieval system
