Ciona intestinalis (yellow sea squirt): 100179861 Help Entry 100179861         CDS       T01056                                  Name (RefSeq) 3'-5' RNA helicase YTHDC2-like   KO K20099   ATP-dependent RNA helicase YTHDC2 [EC:5.6.2.6] Organism cin  Ciona intestinalis (yellow sea squirt) Brite KEGG Orthology (KO) [BR:cin00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:cin03041]     100179861 Enzymes [BR:cin01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      100179861 Spliceosome [BR:cin03041]  Other splicing related proteins   Spliceosome associated proteins (SAPs)    RNA helicase-like proteins     100179861 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  OB_NTP_bind HA2_C R3H HA2_N DEAD Helicase_C AAA_19 nSTAND3 PhoH ATPase NPHP3_N Motif Other DBs NCBI-GeneID:  100179861 NCBI-ProteinID:  XP_002123879 Ensembl:  ENSCING00000024360 LinkDB All DBs Position 10:complement(2564197..2578033) Genome browser AA seq 1013 aa AA seqDB search MEKHVDIEDHVALGINAALSMFEEDESSVETTLPSSLTNHERAYVHRMSSSYGVISKSVG QGTSRYVVLHKVQERNIVDTPLLCKLSQTSKWVLQSLLARWPSKPKEKIESLRPEKNCGV KFGYYADITKPSGRLPNGIPQIPSPCLTQTFDSFQSNLPIYSKKSEILETIWKNDTVLIA GKPGCGKSTQLPQYILDESLKQKQVCRIICVQPRRSLAVSMAERVAKERGECVGQTVGYQ IRLESRASPRTLLTFCTNEVLLRTLMAGQSVLQTMTHIIMDEIQERDKFGDILLIRLRQL IPNHTFHLLLNTCDTDNMMLINYLQPCPVIKVDSKSFDVKEYFLEDIISRSSEFGIQHDV IRVSEEVVERENQNMVHDMEDVLILDKSNSVEDLLENTSDENSLQGGINQPTKTYDGSNG VVSVGQIHDDLHHVDYDLILCLLELLCTDYTGSILVFLPGYDEIITLRDRIIHSNKVNRT CNLNIFILYSSTYTLSDHSQIYKPEEEGTRKIILSTNVAESCITVDDVCHVIDLGRNNVT NTMYQESSRKIEWISQVSSKKRCYRAGKQGSGVCFHLFSKARKLGPLIPELTRIQLYELI LQIKLLDTSDPVKHFLTHSIDPPNVETIDNAVQLLKQIDALDETSNITELGQHLVDLPID PRLGKMILYAVVLKCLDPILTIACALTFNDSFIEASPCIAREVINTRCKFAAGTYSDHMC LLRAFQAWQKARCDGWEKRFCDKYFMSLATMEKIIGLRSQLLGQLRATGFVRARGGSDIR DLNLNSENWAVVKAAVCVGMHPNIAQVDRCKKIIRISQNEKLQFHPSSVLTKDSCGKELG NNHAIDNLPSDWIMFNEKINGDDGMIATCCTCVTSVCVALFTGTSSLTEAEYVSGPTSGI YDDDCSSDNESDEINKLAIFASSACIRLIMDPVFAGMLAQIRTRWNSLFARRIRNPSKPW QPDDEAMLSAVINILTSEEDTLKLMQPSGIGQRPRPAAQDDVDRTRCFVNKSS NT seq 3042 nt NT seq  +upstreamnt  +downstreamnt atggagaagcatgttgatatagaagaccatgttgcattgggtattaacgctgcgttatct atgtttgaagaagatgaaagtagtgtagaaacaacattgccttcatcattaacaaatcat gaacgagcgtatgtacacaggatgtcatctagttatggggtaatatcgaagagtgtgggg cagggaacatcacggtatgttgttttacacaaagtacaggaaagaaatattgtcgataca cctctgttatgtaaactcagtcaaacatcaaaatgggttttgcaatcactattggcaaga tggccaagtaaaccaaaagagaaaatcgaatctttacgaccagagaagaattgtggagtg aaatttggatattatgctgatattacaaaaccaagtggccgcctaccgaacggaatccct caaataccctccccatgtttaacgcaaacttttgattcctttcaatcaaacttaccaatc tatagcaagaaatctgagattttagaaacaatatggaagaatgatactgtgcttattgct ggtaaacctggatgtggaaaatctacacagttacctcaatacatattggatgaaagtttg aaacaaaagcaagtttgtcgaataatatgcgttcaaccgcgtcgaagtttggccgtgtcg atggccgagagggttgctaaggaaaggggggagtgtgtcggtcaaactgtcggatatcaa attcgcctggaaagcagggcatcaccgaggaccttgctcacattttgtacgaacgaagtt ttgcttcgaacactgatggctgggcagtccgtgcttcaaacaatgacccatattattatg gatgaaattcaagaaagagataaatttggtgacattctgttaatccgactgcgtcagtta atcccaaaccacacgtttcatttgttgttaaacacgtgcgataccgataatatgatgtta atcaattatttacagccgtgtccagttattaaagttgatagcaagtcctttgatgtaaag gaatattttcttgaagatattataagcagatcatctgaatttggaatacagcatgatgtt attcgagtttcagaggaagttgtggagagggaaaatcagaatatggttcatgacatggaa gatgtattaatactggataaaagcaattcagttgaagatttattggaaaatacttctgat gaaaattcattacaaggtggtattaaccagccaaccaaaacatatgatggttcaaatgga gtggtttcagttggtcaaatacatgatgacttgcatcatgttgattatgatcttatctta tgtttactggaattactttgcaccgattacactgggagtattcttgtgtttttgcctggg tatgatgaaataattacgttgcgtgatcgaatcatacacagcaacaaagttaacagaacc tgcaaccttaatatctttatattatattcatcaacctatacgttatctgaccattcacaa atttataagccagaagaagagggaacaaggaaaattattttgtccacaaatgttgctgaa agttgtattactgttgatgatgtctgccatgttatagatctaggcaggaataatgtaact aacacaatgtatcaggaaagttctagaaagattgaatggatatcgcaagtcagcagcaag aaaagatgttacagggcaggcaagcaaggttctggcgtttgctttcacctgttttctaag gctcggaaattgggtcctttgataccagagcttacccgcattcaactttatgagttgatt cttcaaattaagttgttggacacctcagatcctgtgaaacatttccttacacattcaatt gacccgcccaatgttgaaactattgataatgctgttcaacttttgaagcaaattgatgcg ttagacgaaacatcaaatataactgaacttggacaacatttggttgacttacctattgat ccaagacttgggaaaatgattttgtatgctgttgtcctcaagtgtttggatccgatatta accatcgcatgtgcgttaactttcaatgattccttcattgaagcttctccgtgtatagca agagaagtaataaatactcgctgtaaatttgctgcaggaacatacagtgaccatatgtgc ctactgcgagcattccaagcgtggcagaaagctcgttgcgacggttgggaaaaaaggttt tgtgacaaatacttcatgtcgcttgctactatggaaaaaattattggtcttcgtagtcag ttgttgggacaactgagggcgacagggtttgttcgtgccagaggtggaagtgacatcagg gatttaaatttaaactcggaaaactgggctgtggttaaggcagcagtgtgcgtaggaatg catccgaacattgcacaagttgatcgatgtaagaaaataataagaatttcccagaatgaa aaactacagttccatccaagttctgttttaacaaaagattcttgtggaaaagaacttgga aacaaccacgcaattgacaatttaccatctgattggataatgttcaatgagaagatcaac ggtgatgatggaatgattgcaacatgttgtacgtgtgttacttctgtttgtgtggctttg tttaccggcacttcttctttaactgaggccgaatatgtgagtggtcccacatcgggtata tatgatgatgactgtagtagtgataacgaatcggatgaaataaataagttggcaatattt gcatccagcgcttgcatacgcttgatcatggaccctgtgtttgctggcatgcttgctcaa attcgtacgaggtggaacagtttatttgctcggagaattcgtaatccttcgaagccatgg caaccagatgacgaagcaatgttatctgctgtgatcaatatattaacaagtgaagaagac actcttaaacttatgcaaccatcaggtatcggccaacggccacgtcctgcggcacaagac gacgttgataggacaagatgttttgtgaacaagtcttcttga

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