Ciona intestinalis (yellow sea squirt): 100179911
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Entry
100179911 CDS
T01056
Name
(RefSeq) laminin subunit beta-1 isoform X7
KO
K05636
laminin, beta 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100179911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_EGF
Laminin_N
LAMININ_IV_B
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
100179911
NCBI-ProteinID:
XP_002127794
Ensembl:
ENSCING00000006305
LinkDB
All DBs
Position
Unknown
AA seq
1754 aa
AA seq
DB search
MRLLLCVAVIAIGIETAFAQGGCAGSSCFPSTGDLLVGRGDMLSSTSTCGQEGRERYCIV
SHLKDVRKCFTCDASVPAQAHEVSNVITTQLDDRLLTWWQSESGQQRVSIQLDLEAEFQF
THMIMTFKTFRPAAMFIERSMDFGKTWAVYRYFAYDCDKSFPGIPEWPPREIDDVICDSR
YSLIEPSNGGEVIYRVLEPFITIDDPYVPRIQNLLKITNLRFNFTELHTLGDDLLDSRND
IKNKYYYALYELIVRGNCFCYGHADECTPINGAHRDAHTNSVMVHGRCRCQHNTVGLNCE
QCLPFYQDQPWRPAEAGMPHECKACNCNNHATECHFDPAVYAATGQVSGGVCENCQHNTV
GRNCEQCASYYYQDASKDIRDPTVCVACDCDVAGSLDDGICDGLTDPDLGMIAGQCRCKQ
YVQGQRCDQCRDGYFGLDANNPNGCTACDCDSLGTLSGANTCDSETGQCICKRFTTGRRC
DMCVPQTWGMSAIPHGCNECDCDIGGAYDNDCNQASGQCNCRPNINHRRCDSVISGNFLP
GLDYYLYEAEDAEIQKGAFEDKRKHVPPLTWTGDGFMLVQEEGVIIFTVNNLPKSMDYNL
VLRYQSTMPNMWQYVDVTIDRPNRGNIPTSSPCGNTRPEDDEWMTSLPGPPTTHSSLGII
CLESKYTYRIILDMRRYQREHDPNGLTPDILIDSLLVVPVHSGLDMFQGTIEGRQRTRQF
TELECEESEMYVPDRTPHEECADLLFSMSAIIHDGAKPCDCNPQGSTSSICETWAGQCQC
KPNVIGRKCDRCAPGTYGFGPTGCRECDCDALGSRNEFCDIARGQCECLPGVSGRRCNQC
MPGHYDYPNCYRCNCNGHTDSCDQETGECLGCRDNTMGAHCDSCIDGYYGNPLLGSLDQC
KACMCPDGPGSGRQYSTGCRQDQVSGQVVCYCMPGYAGARCDQCAPAYWGNPQTVNGLCR
KCECNNNIDPFDPTACDSATGVCTNCLHNTAGPHCEQCRDYYYGNPLDQNCMACQCNLLG
TDSSVCVNGQCQCDATTGQCPCYPNVSGQNCDQCLPNHWKLASGTGCESCGCSPEHSLGT
TCNEITGQCLCVDGFGGRTCHNCADGYFGNPDIECYACECNIFGSVSTQCNTNTGQCECR
DGVGGRRCDRCLRGFTGEVPNCEPCGECFDNWDVIISQLKDRTDRAISRAREIGETGITG
AYNEEFELITELLKNISANALEMPKPDFMAMVETIQNRLKLQEDKLVALEHDMTRIRNDD
TKVNEDMISLDEQAVAVNAKLDNLRDQKQSISKVSPVAAFKQVEDAAAASEAAERAAQAA
TTEPGNLLEQSQQIRDAVEADLDDKQSEFDFKLSQVNDDITARQSDVNDLTLSELNKDIC
GAATEGCDESCGGAGCDTCGGIGCTGAVQFASDAKNRAQKTQETLTRVADETGDLRNRVQ
LAKTSAQEAKNQAQEAHTMAQEVESVIRQQNSEVRKLIQDIREFLEEEKADPNDIKDLAN
QVLALSLPVSRSEIDALAEEIRDLVDRLPNVDEILAETDGDLERANQLLADANQAKQAAT
AVASDAKAVVTALSQADNASRAAEAAKTQAANDIQLAEDKINEIKSAITDLEGQMTGISN
RIGEFTERLNAVEHQLTENKLSLGSALDEATAANATANMALQNLQGQSALINEATSAINE
KKDKTDRLAALRRKAQELTDTVAQNQQQFESLSDQLDSYDRQLNMKNDRLDALLAEVERL
YSSIQLQEKYLRNC
NT seq
5265 nt
NT seq
+upstream
nt +downstream
nt
atgaggcttctgctatgtgtagcagtgattgctataggtattgaaacagcatttgcgcaa
gggggatgcgccggtagcagttgtttccccagcacaggtgatttattagttggtcgtgga
gatatgttgtcatctacatccacatgcggacaggaaggaagagagcgatactgtattgtc
agccatttaaaggacgtccgaaaatgttttacgtgcgatgcttcggtgcccgctcaagcg
catgaggtctcaaatgttatcaccacccaactggatgatcgcttactaacctggtggcag
tcagaaagtggtcaacaaagagtttcaattcagcttgatttagaagctgagttccaattc
acacacatgataatgacattcaaaactttccgacctgctgccatgtttattgaacgttca
atggactttggaaaaacatgggctgtgtacagatatttcgcttacgattgtgacaaatca
tttccgggaattccagagtggccaccccgtgagatcgacgacgttatatgcgacagtaga
tattctctaatcgagccctcaaatggcggtgaagttatttacagagttcttgagcctttt
atcacaattgacgacccctatgtacccaggattcaaaatctgctcaaaatcacaaactta
cgttttaatttcaccgagctgcatacacttggcgacgatttattggattctcgaaacgac
ataaaaaacaaatactactacgctctctatgaactcattgtacgcggtaactgcttctgt
tacggccatgctgatgaatgcacgccaatcaatggagctcacagagacgcacacactaat
agtgttatggtgcatggtcgttgccgatgtcaacataatacagtcggattaaactgtgaa
cagtgtctgccattttatcaagaccaaccatggcggcccgcagaggctggcatgccacat
gaatgcaaagcttgcaactgcaacaaccacgccactgaatgtcattttgaccctgctgta
tatgctgccactggccaagtttctgggggggtgtgtgaaaactgccaacataacaccgta
ggcagaaactgcgagcagtgcgcatcgtattattaccaagatgcaagcaaagacattcga
gacccaactgtttgcgttgcttgcgactgcgacgttgctggctcgcttgacgatggaatt
tgcgacggtctcacggacccagatttaggcatgatagctggccagtgtcggtgtaaacag
tacgtacaaggacaaagatgcgaccagtgcagagatggctattttggactcgatgccaat
aaccccaatggatgtacagcttgcgattgcgattctttgggcactttgtcgggtgctaac
acatgtgacagcgagaccggtcaatgtatttgcaaacgttttacaactggcaggagatgt
gatatgtgtgtcccacaaacctgggggatgagtgcgataccacatgggtgtaacgaatgc
gattgtgatattggtggcgcatatgataacgattgtaatcaagcgtctggacaatgcaat
tgtcgtcctaacattaaccacagaagatgcgattcggtgatttccggaaattttctgcca
ggactggattattatttgtacgaagctgaagatgcagaaattcaaaaaggtgcatttgaa
gacaagcgaaagcacgttccacccctcacatggacaggtgacgggttcatgctcgtacaa
gaagaaggggttattatattcaccgtcaataacttgccgaaatcaatggattacaatcta
gtgcttagataccaatctacaatgccaaatatgtggcagtacgtagacgtgacgatagac
cgacctaacagagggaatattccaacttcaagtccctgtggtaacacaagacctgaggat
gatgaatggatgacgtcactacctggaccaccaaccacacatagtagtttgggtattata
tgtttggaaagtaaatacacttatcgtattatactggatatgagaagatatcaacgtgaa
cacgatcctaatggtcttacaccggatattctgattgactcacttcttgtggttccggtc
catagcggtttagacatgttccaaggtaccatcgaaggccgacagcgcacgcgacagttt
acggagcttgaatgtgaagaaagtgaaatgtacgttcctgacagaaccccccatgaagaa
tgtgcggaccttcttttctcaatgtctgctattatacatgacggcgctaaaccgtgtgac
tgcaacccccaaggcagtacaagttccatttgtgaaacatgggcaggccagtgccaatgt
aaaccaaatgtaataggacgcaaatgcgaccgatgcgctcccggaacttatggatttgga
ccaactgggtgtagagaatgcgattgcgacgcgcttggatctagaaatgagttttgcgac
atcgcgcgcggtcaatgcgagtgccttccgggcgtctcgggccgcaggtgcaaccagtgc
atgcctggacactacgactaccctaactgctacagatgtaactgcaatggacatacggac
tcctgtgaccaggaaactggggagtgtttaggatgcagagataacactatgggcgcacat
tgtgactcctgcatagatggttactacggcaatccgttattgggaagtctagaccaatgt
aaagcgtgcatgtgtcccgatggccctggaagtggtaggcagtattctacaggttgtaga
caagaccaagtgtctggccaagtcgtttgctactgtatgcctggctatgcaggtgcacga
tgcgaccaatgcgcaccggcctactggggcaacccccaaacagtgaacgggctgtgccga
aagtgcgaatgtaacaataatattgacccgtttgacccaacagcatgtgatagtgccaca
ggtgtctgtacaaattgtttgcataatacagctggtccacattgtgagcagtgcagggat
tactattacggaaatccacttgatcaaaactgcatggcttgccagtgtaatttgttggga
accgacagttctgtgtgcgtgaacggacaatgtcagtgtgatgcaacaacagggcaatgc
ccatgttatcctaatgtgtctggacaaaactgcgaccaatgtcttcctaaccattggaag
ttggccagtggtacgggctgtgaatcgtgcggatgtagtccggaacattctttgggaaca
acttgcaatgagataactggacagtgtctttgcgtggatggatttggtggtcgtacctgt
cacaactgtgcagatggttattttggtaacccagacattgaatgttacgcttgtgagtgc
aacatctttgggtctgtatccacgcaatgcaacaccaacactggacaatgtgagtgcaga
gacggggtcgggggtcgcaggtgtgaccgctgtttaagaggatttactggggaggtcccg
aactgtgaaccttgcggagaatgctttgataattgggatgtaataatttctcaactgaaa
gatcgaacggaccgtgctatttcacgtgcacgtgagattggtgagactggtatcacggga
gcttataatgaagaatttgaacttatcacagaattattgaaaaatatttccgcaaatgca
ctggaaatgcccaaacccgatttcatggcaatggttgaaacgatacaaaaccgcctaaaa
ctccaagaagacaaactggttgcgttagaacacgatatgacacgtattcgaaacgacgac
acaaaagttaacgaagacatgattagtttagacgaacaagcagtcgctgtcaatgctaaa
cttgataatttacgagatcaaaagcaaagtattagtaaagtttccccagttgccgctttt
aaacaagttgaagacgcagccgcggcgtctgaagctgcagagcgcgcagcacaagccgcg
accacggagccagggaatttgcttgaacaatcccaacaaattcgagacgcggttgaagcc
gatctcgacgacaaacaatcggaatttgatttcaaacttagtcaggtgaacgatgacatc
acagccagacaatcggacgtcaatgatctcacactttcggagcttaataaagacatttgc
ggagctgcaactgaaggctgtgatgaatcttgcgggggcgcggggtgcgacacttgtggt
ggtattgggtgcacaggtgccgtgcaattcgccagcgacgccaaaaaccgggctcaaaaa
actcaggaaactttaacaagggttgccgatgaaactggggaccttagaaacagagttcag
cttgcaaaaacaagcgcccaggaagcgaaaaatcaagcacaagaagcccacacgatggcg
caagaggtggagagcgttattcgacaacaaaattctgaagttcgaaaactaattcaagat
attcgggaatttttagaagaagaaaaagccgatccaaatgacatcaaagacctcgcgaat
caagtcctcgctctgtctcttcctgtttcaagatccgagatcgatgctcttgcagaggaa
atccgagatctggttgatcgacttccaaatgttgatgaaattttggccgaaacggacgga
gatctcgaaagagcgaatcaacttcttgcagatgctaatcaagcaaaacaagcagccaca
gcagtagcaagcgatgctaaagctgtcgtcaccgctttatcgcaagcagataacgcttcg
agagcagcagaagccgcgaaaacacaagcagccaatgatattcaacttgcagaagataaa
attaatgagataaagtccgcaataacagatttggaaggccaaatgactggaatttcgaat
cgcatcggtgaattcactgaacgactgaatgcagtggaacatcaacttacagaaaacaaa
ctgagcctcggcagtgctttagacgaagcaactgctgcaaatgcaactgctaatatggcc
ctgcagaatttacaaggtcagtccgctttaattaatgaagcaacatctgcaataaatgaa
aagaaagataagacggacagacttgctgctttaaggagaaaagcacaagaactcacagat
actgtggctcaaaaccagcagcaatttgaaagcttaagtgaccagttggacagttatgac
cgacagttaaatatgaaaaacgaccgcctggatgcattattggcagaagtagagcgtcta
tactcttccattcaactacaagagaaatatcttcgcaactgttaa
DBGET
integrated database retrieval system
