KEGG   Ciona intestinalis (yellow sea squirt): 100180168
Entry
100180168         CDS       T01056                                 
Name
(RefSeq) protein LSM14 homolog A-B isoform X1
  KO
K18749  protein LSM14
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cin03019]
    100180168
Messenger RNA biogenesis [BR:cin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     100180168
SSDB
Motif
Pfam: LSM14 FDF SM-ATX
Other DBs
NCBI-GeneID: 100180168
NCBI-ProteinID: XP_002131521
Ensembl: ENSCING00000009554
UniProt: F6U8F3
LinkDB
Position
3:2457943..2463516
AA seq 518 aa
MSCPSPYIGSKISLISKAKIRYEGILYTIDTEKATVALAKVRSFGTEDRQTDRPPVAPRD
EIYEYIIFRGADIDDLTVCEPPKPTPPPAAPTLPQDPAIVQSVVTSQQSGPPPLPPFAGG
GLYNQMPPNYNAYMNYQPLAPGQPTSMMDKPPVTSNALQNQGPTRAEKSSSPVSLGRSSP
TSEQGVQTGSPVVPSQERSTQRRTYESNNYYNSRNNYDNRGGARHDNREAEYENRNRGYK
GPQSGYENRNGGGQYNNDDGEGRGRGQRRNYYYRGQNDGHSQNYRGQRSRGGRRYNPRND
PLKFDGDFDFEGSNAQFNKEDIAKELMDKLKITSDPKESEKVKEEEKVDSGVDSGHNNEV
TDELDENEEVPYYDKTKSFFDNITCETNNPRGERISWTEERKRNTETFGYGYRGRGRGGY
RGRGGYRGRMPPGSGYRGRGGNRGGYRDNRYNNYYNNRRDYNRDRGDGQQYNYNNRGGNN
SRGGYNDKSRQWVNYEYKYDKHNSSNSPTAGQTQSSTS
NT seq 1557 nt   +upstreamnt  +downstreamnt
atgtcttgtccaagtccgtacattggaagtaaaatcagcttgatatcaaaagcgaaaata
cgctatgaaggaatattgtacacgatagatactgagaaggcaacagttgctcttgccaaa
gtgcgttcttttgggactgaagatcgacaaacagatcgcccccctgttgctccgagagat
gaaatttatgaatacataatattcagaggggcagatattgatgacttaaccgtctgtgag
cccccgaagccaacccctcccccagcagcaccaactttgccacaggatccggcaattgtt
cagtccgtagtgacatcacagcagtctggccctccacccctcccaccattcgcaggcggt
ggtctctacaaccagatgccaccgaattataatgcctacatgaactaccaaccattggca
ccaggccagccaacatctatgatggataagccaccagttacaagcaatgcattgcaaaat
caaggtccaacaagagcagaaaagtcatcttcacctgtatcactcggtcgatcctcgcca
acctctgagcaaggagttcagacgggaagtcctgttgttccttcacaggagagatcaact
caaaggagaacttatgagagcaacaactattataacagtcgtaataattacgataatcgc
ggaggtgcaagacatgataacagagaagctgaatatgagaatagaaatcgggggtacaaa
ggtccacaaagcgggtatgagaatcgcaatggaggtggacaatataataacgatgatggc
gaaggcagagggcggggacagcgtcgtaattattattaccgtggacagaatgatggtcat
tcccaaaactatagaggacagagaagccggggagggcgcagatacaacccaagaaatgat
cctttaaaatttgatggcgattttgactttgaaggatcaaatgcacagtttaataaagag
gacatagctaaggagcttatggataaactaaagataacctctgatccgaaggagagtgaa
aaagtaaaagaagaagaaaaggttgatagtggagtggacagtggccataataatgaagtt
actgatgaattagatgagaatgaagaagtcccgtattatgataaaacaaagagtttcttt
gacaatataacttgtgaaacaaacaatccaagaggggaacgtatttcttggactgaagag
cgaaagcgcaacactgaaactttcggatatgggtaccgaggtcgtggtagaggaggttac
cgggggcgtgggggttatagaggcagaatgccaccaggttcaggatatcggggccgtggt
gggaaccggggtggttatcgagataatagatacaacaactactacaacaaccgtcgcgat
tataatcgagatcgtggtgatggacagcaatacaactacaacaacagaggtggcaataac
agcagaggtggttacaatgataaaagtcgacaatgggtcaactatgaatacaaatacgac
aaacacaattcgagcaattcaccaactgctggacagactcaatcaagcacctcataa

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