Ciona intestinalis (yellow sea squirt): 100180242
Help
Entry
100180242 CDS
T01056
Name
(RefSeq) probable ATP-dependent RNA helicase DDX52
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cin03009
]
100180242
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100180242
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
90S particles
Helicases
100180242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Telomere_reg-2
AAA_19
Motif
Other DBs
NCBI-GeneID:
100180242
NCBI-ProteinID:
XP_002127349
LinkDB
All DBs
Position
Unknown
AA seq
538 aa
AA seq
DB search
MDSEDIFRQLTVGASFNSKLNLKDIRIPGAITPSRNENIQPGKPKRKKDENDTENDQQNE
KSDDTKVNLRKQMRIFVQGTDVPDLVENFNQLEEKFGVHSICVKNLTERFGFSALSPIQM
QAIPAMLDGREILACAPTGSGKTLAFLVPVVSHLLNVKKTKKGKNIRALILSPTRELAEQ
TFSECKKLIRSENDEENEKIHKDLLNIRLMDKNLVKSFTEKKKQTCDIDLLISTPNRIIH
LIKQETPILKLDSIEWLVVDESDKLFEDGKEDASFRDQLGRIYSACENPKIRRAMFSATF
AHDVQQWCVLNMDNVLQVTVGGKNTATSSVKQELKYVGNEQGKLLAMQDIIRGGFAPPAL
VFVQSKERAKELYAELVYDGINIDAIHGDRTPEQREKAIQSLHAGTTWVMICTEHMGRGM
DFQNVNLVVNYDFPNSAVTYIHRIGRTGRAGRTGRAITLFTDQDRALLRSIANLIKEAGC
DVPEYMLKMKKMSKEERKKTAKTQTKRNTIRTAPPDILKRAKKRKTEIKNKKIQKLKE
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggactcagaagatatatttcgacagcttacagtcggtgctagctttaattctaaacta
aatttaaaagatatacggattccaggagctataacgccaagtaggaacgaaaatatacag
cctggcaagcccaaaaggaaaaaagacgaaaacgatacagaaaatgatcagcaaaatgag
aaatctgacgatacaaaagttaatttacggaaacaaatgcgtatttttgtccaaggcacc
gatgtacctgatttggtggaaaattttaatcagttagaagaaaaattcggtgtgcattca
atctgcgttaaaaacttgactgaaagattcggattttctgcgttaagtccaattcaaatg
caagctatacccgctatgttagacggcagagagattttagcttgtgctcctaccggatct
ggtaaaacacttgcatttttggtacctgttgtctctcatttgctaaatgtcaaaaaaaca
aaaaaaggtaaaaatattagagctctcatactcagtcctacaagagaattagcggaacaa
actttcagcgaatgcaagaaacttattcgctcagaaaatgacgaagaaaatgaaaaaatc
cacaaagacttactgaacatccgccttatggataaaaatttagtgaaatccttcacggaa
aagaaaaaacaaacgtgtgatatagatcttctaataagcacacccaatcgtattattcac
cttataaaacaagaaacccctattttgaagctggactctattgagtggttagtagtagat
gaatcggataaactcttcgaggatggaaaagaagatgccagcttccgagatcagctcggg
aggatttattccgcatgcgagaatccgaaaattcgtcgcgctatgtttagtgctactttt
gcgcacgacgttcagcaatggtgtgttctaaatatggataatgtgctacaggttacagtc
ggggggaaaaatactgcgaccagttctgtaaaacaagagctaaagtatgtgggaaatgag
caagggaaacttctcgctatgcaagatattattagaggtggttttgcacctccagcgcta
gtttttgtgcaatcaaaggaaagagcaaaggagttatacgctgaacttgtatatgatggt
attaatattgatgcaattcatggagacaggactccagagcagcgagagaaagctatacag
tccctacatgctgggacaacatgggtaatgatatgtacagagcatatgggtcggggtatg
gattttcagaatgtgaatttagtcgtaaattacgattttcccaacagtgcggtcacttat
attcacagaattgggcgcactggaagagcaggccggacagggcgcgcaattacgctattt
actgaccaggaccgggctcttttaagatcgattgcaaatttaatcaaagaggctgggtgt
gatgtgccggagtacatgctcaaaatgaagaagatgtcaaaagaagagcggaaaaagaca
gcaaagacacaaacgaaaagaaatactatccggactgctccccctgatattttaaaaaga
gcaaaaaagagaaaaacggaaatcaaaaacaaaaaaattcaaaaattaaaagagtaa
DBGET
integrated database retrieval system
