Ciona intestinalis (yellow sea squirt): 100180632
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Entry
100180632 CDS
T01056
Name
(RefSeq) vacuolar protein sorting-associated protein 35
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
100180632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100180632
Membrane trafficking [BR:
cin04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
100180632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
100180632
NCBI-ProteinID:
XP_002130247
Ensembl:
ENSCING00000000288
UniProt:
F6ZZJ8
LinkDB
All DBs
Position
12:1695972..1699198
Genome browser
AA seq
804 aa
AA seq
DB search
MGESALPNSEEQERLLDEALQVVKRESFHMKRELDKNKLMDGLKHASDLLKELRTSALTP
KNYYELYMAVCDELRHLQIYLTDEFQKGRLVSDLYELVQYAGNIIPRLYLLVTVGVVYIK
VKPGSCEAILKDLVEMCRGVQHPLRGLFLRNYLLQCTKNVLPDTCDGEQKGDNGDKGATI
QNSIDFILLNFAEMNKLWVRMQHLGHSREKERRERERQELRILVGTNLVRLSQLEAVDVN
SYRKIVLNGILEQAVSCRDPIAQEYLMECIIQVFPDEFHLQTLRSFLRACADLHPQVNIR
NTIIALIDRLSHFATKDDGTGIPNDVMLFDIFSEQIANIIEVRPQMKLEDVVSMQTALVN
LAFNCYPERTDYVDRVLEATVQVFETRNVELVMNGSHLCKEMCELLQVPITIYNNILTIL
QLQYFAPLYEHLDYQSRKKIAVNMVSNALDHNTVVSSPEETDLFLMLVSPLIQDQADQPA
DIDEEDFIEEQGLVGRFAHMLYSDDPDQHFQILRKAQSHFAKGGNKRMRFTFPAVVCASY
SLTLRFKEQKEEDAAWQKKCQKIFETCRSVINTLCQAEYSELPIRLFLQGALAASELEFE
NHEAVAYEFISQAFSIYEEEIADSRAQLAAVMLLVSTIEKCKCFSEESHAPLRTQCAHAA
SRLLKKPDQSRAVAHVAHLFWSGCTQETDKKEMRESRRVVECLKKAIRTANQCMEPAVQL
QLFVEILNKYIYFYERGCTGITVDLLNQLIAKIREELGGLESSDCEVIQIHFDNTLRHIQ
QLVENSKEKDLTNDGEKLFEGILL
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaagtgcacttccaaactcagaggagcaggagcggctcctggatgaagcgctt
caagtagttaaaagggaaagtttccacatgaaacgagaacttgacaaaaacaagctgatg
gatggcttaaaacatgcctcagatttgttaaaggaactccgaacttctgctctaactcca
aagaattattatgagctgtatatggcagtgtgtgatgaacttcggcacttgcaaatctac
ttgacggatgagtttcagaaaggtaggctggtttctgacttgtacgaactggtgcagtat
gctgggaacataattccacgtctgtatttactggtgactgtaggtgttgtgtatattaag
gtgaagcctggttcttgtgaagcaatacttaaagatcttgttgagatgtgcagaggtgtg
cagcacccgttacgtggcttgttcttgaggaactacctactacagtgtacaaagaatgtt
ttaccagacacatgtgatggggaacaaaaaggagacaatggtgataaaggagccaccatt
caaaattccattgactttattttgcttaactttgccgagatgaacaagctatgggtgaga
atgcaacatcttggacacagcagggaaaaggagagacgggagcgagagagacaggaactt
aggattcttgttggaactaacctggttcgactaagtcaacttgaagcagttgatgtaaat
agttacagaaagattgtgttgaatgggatcctggaacaagctgtaagttgcagggacccg
atagcacaggagtatttgatggagtgcatcatacaagtcttccctgatgaatttcatctg
cagacactacggagtttcttgagagcgtgtgcggacctacacccacaagttaacatcagg
aacactatcattgctcttattgatcggttatcacattttgcaaccaaagatgatggaaca
ggtattccaaacgatgttatgctatttgacatcttctctgaacagattgccaacatcatt
gaggttcgtccacagatgaaattagaagatgttgtgtcaatgcagactgcacttgttaac
cttgcattcaactgctaccctgagaggacagattatgtggacagggttttagaagccact
gtacaggtttttgaaactagaaacgttgagttggtgatgaatggcagccatttgtgtaag
gaaatgtgtgaacttctgcaagtaccgatcacaatctacaataacattttaaccattctg
cagctacagtactttgcaccactttatgagcatttggattatcagtcaaggaagaaaatt
gctgtaaacatggtaagcaatgccttggatcacaacactgttgtgtcttcaccagaagaa
actgatttattcttaatgctggtttctccacttatccaagatcaggcagatcagccagca
gatattgatgaagaagattttattgaagaacaaggattggtgggtcgatttgcccacatg
ttgtactctgatgatccagatcaacattttcaaattcttaggaaagcacaatctcacttt
gctaaaggaggaaacaaacgaatgcgtttcacttttcccgctgtagtatgtgcttcttat
tcacttaccttaagatttaaagaacagaaggaagaggatgctgcatggcagaaaaagtgt
cagaagatctttgaaacatgtcgttccgtgattaacactttgtgtcaggccgagtacagt
gaactccccattcgcctctttcttcagggtgcgcttgctgcatctgagctggaatttgaa
aatcatgaagcagttgcatacgagtttatctcacaagcgttctcaatatatgaagaggaa
attgcagatagcagggctcaactggctgcggttatgctattagtcagcactattgaaaag
tgtaaatgcttctctgaggaaagccatgctccactaagaactcagtgtgctcatgctgca
tctcgtttgctgaagaagccagatcagtcaagagctgttgcccatgttgcccatctattc
tggtcgggttgcacacaagaaaccgataaaaaggagatgcgagaatcgcgtcgtgttgtt
gagtgtttgaagaaggccatccgcacagccaaccaatgcatggagcctgctgtacagctt
caactgttcgtggagattctgaacaagtatatttacttctatgaacgtggatgcactgga
atcactgtggacctgctgaaccaacttattgctaaaattagagaggaacttggaggactg
gaaagttctgactgtgaagtcattcagattcactttgacaatacattaagacacattcag
caacttgtagaaaattcaaaggaaaaagatctaaccaatgatggtgaaaaactttttgaa
ggaattttgctgtaa
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