Ciona intestinalis (yellow sea squirt): 100180637 Help Entry 100180637         CDS       T01056                                  Name (RefSeq) helicase POLQ-like   KO K19178   POLQ-like helicase [EC:5.6.2.4] Organism cin  Ciona intestinalis (yellow sea squirt) Brite KEGG Orthology (KO) [BR:cin00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:cin03400]     100180637 Enzymes [BR:cin01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.4  DNA 3'-5' helicase      100180637 DNA repair and recombination proteins [BR:cin03400]  Eukaryotic type   Other factors with a suspected DNA repair function    Helicases     100180637 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  POLQ_helical DEAD Helicase_C HTH_61 ResIII HHH_5 DUF4332 Roughex DNA_pol_lambd_f Motif Other DBs NCBI-GeneID:  100180637 NCBI-ProteinID:  XP_002120889 LinkDB All DBs Position 8:complement(3135339..3145378) Genome browser AA seq 1014 aa AA seqDB search MSSHKRKMSTTAARKRRKMSFEMLAESERQSEVSIANKSNSLEEQIPNAQSRKETTIVDN PPSPTDLFDVSDITVHSETIDLFDSDIFETSVKQKSADVSKNEAKQLREGMKFNDIDIVP SNQQQQQQQQEKQQEQQNDSTFGDMDLSLLERQCLLEMKEKENKNHIKTPVKTKTPIAQS TPQVKAGNVSGLARRMKDRLLENAHRTPTSKTSNILRTKPPHPPTQQLLTQDIGPYYGLP SKVKTLLGTLRGIKSVYDWQHKCLTLDGVKEGRNLIYSLPTSGGKTLVAEILIFRELLCK KKDAVFVLPFVAIVQEKIQSLAQFAVELGFLVEEYAAGKGRFPPRKRRKRNVLYVCTIEK ANTLVNSLVEASRLSELGLIVVDELHMIGEGGRRGSTIETMLTKVMHVSGSTQIIGMSAT LSNLPDLQKFLNADVFTDNFRPVALDEFVKVADSVFKVDSATLCPEERLEFHRMIGHQTK EIAKGDTDHIVSLVLEVIPQHSCLIFCPTKKNCENVAKMICKLLPRNFLEQKVKQKISML EGLCNEGEICQVLRGAIPYGVAYHHSGLTTDERRIIEDGYRNGVLSVITCTSTLAAGVNL PARRVIIRSPHIGRSFMSRSQYKQMIGRAGRAGIDTKGESFLIVSKPQDQVKVVDLIGGP VETCISSLMYDSGKGFRTLLLNLIGLKIITKTSDVLNFFSKTFFSTQISTIQEKKPHLLE TDESTNVESLSASTTEHLLSVNMIRMDESTNDGSFQVTKLGNATFKSSIDYDISNQLYDD LKNGLQGLVLENYLHLLYLVTPYDTMVSPDWMVYLNEINRLEPGELAAATVIGIEECYIT MRASGRNPRKKKANQPKIDRFYVTLMLNLLFKGKSVWEVSTRFDQPRGFLQNLLSNAAAF ASHILLFTKELDELWAYQSLIEKLIQVLQYCTVAELVPLMEIPGVRMTRAKQLLSSGFKT LAHIATAQPGALCQSIDHLSRKQAAQLIASAKILLEEKVESLQEEVEDLKAVTT NT seq 3045 nt NT seq  +upstreamnt  +downstreamnt atgtcttctcataaacgaaaaatgtcgacaaccgctgctagaaaacgaagaaaaatgagt tttgaaatgttagctgaatccgaacggcagtcagaagtttcaatagcgaacaagtcaaat tctttagaagagcaaataccgaacgctcagtcaagaaaagaaaccaccatagttgacaac ccaccctcacctactgatttatttgacgttagtgacatcacagtacattcggagacgatc gatttatttgattcagacatttttgaaacaagcgtaaaacaaaaaagtgcggatgttagc aaaaatgaagcaaaacaacttagagagggcatgaagtttaatgacattgacattgtccca tctaaccaacaacaacaacaacaacaacaagaaaaacagcaagaacaacaaaatgattca acttttggagacatggatttatctttattagaacgtcaatgtttgttagaaatgaaagaa aaggaaaataaaaatcacataaaaactccggtcaaaaccaagacaccaatcgctcaatca acaccacaagttaaagctggaaacgtgagtggtttagcacgaagaatgaaagacaggttg ttagaaaatgctcatcggaccccaactagtaaaacaagcaacatactacgtaccaaaccg ccccatccacccacacaacaattattaactcaagatattgggccttactatggattgcct tctaaagttaaaactttattaggaactttaagagggataaagtctgtttatgattggcag cataagtgtctgacactcgatggtgtcaaagaggggaggaatttaatttactcactgcca actagtggtggtaaaacattggtcgccgaaattttaatattccgtgaattattatgtaag aagaaagatgctgtgtttgttctaccatttgtggcaattgtgcaagaaaagatccaaagc ctcgcacagtttgctgtcgaacttggtttcttagttgaagaatatgctgcaggcaaaggg aggtttccaccaaggaaaagaaggaaacggaatgttctttatgtttgtacgattgagaaa gcaaatacgctggtaaattcattggttgaagcctcacggttgagtgagcttggtttaata gttgttgatgagcttcatatgatcggggaggggggtaggaggggatcaaccattgaaact atgcttactaaggttatgcatgtatcaggttccactcaaatcattggtatgtccgcaaca ttaagcaatcttcctgatctacaaaagtttttgaacgctgacgtttttaccgacaacttt cgtcccgtggcattggacgagttcgtcaaagttgctgactcagtgtttaaagttgactca gcaactttatgtccagaggaaagactggaattccatcggatgattggccaccagactaaa gaaattgcaaaaggagatacagaccatattgtaagccttgtattagaagttataccccaa cattcttgtctcatattctgcccaaccaagaaaaattgtgaaaatgttgctaagatgata tgtaagctattaccaaggaatttcctggagcaaaaagtaaaacaaaagatctctatgttg gaaggtttatgtaacgagggtgagatctgccaagtattgagaggtgccatcccatatggt gtcgcttaccaccatagtggtttaacaacagacgagcgtcgtataatcgaagatggatat cgtaacggagttctatcagtgattacatgcacatctacccttgcagctggtgttaatctg cctgcaagaagagtcatcatacgctcgcctcacattggtcgaagcttcatgtcacgatct caatacaagcaaatgattggtcgagctgggagggcggggatcgacaccaaaggtgaaagt tttctcatcgtttcaaaacctcaggatcaagtaaaggtagtagacttgataggaggacca gtggaaacttgtatcagcagcctcatgtatgattctgggaaaggatttcggactttgctg cttaatcttattggtttaaagataatcacaaagacctcagacgttttaaactttttctca aaaacttttttttcaactcaaatatcaacgattcaagaaaagaaacctcatttactcgaa acagacgaatccacaaatgtagaatctctatcagcttcaacaactgaacatctactcagt gtcaacatgattcgaatggatgagtctacaaacgatggaagttttcaagttactaaactc ggaaatgcaacctttaaatcttcaattgattatgacatcagcaatcagctttatgatgat ttaaagaatggattacaaggtcttgtgttggaaaactaccttcatttattgtacctggta actccatatgacacaatggtgtcacctgattggatggtttatttaaatgaaatcaatcga ctggaaccgggtgaattagctgcagcgacagttattgggatcgaggagtgttacatcaca atgcgggcgtctggaagaaacccaaggaaaaaaaaagccaaccaaccaaagattgacaga ttctacgtcaccctaatgcttaaccttctatttaaaggaaagtcagtatgggaggtttca acaaggtttgatcaacctcgtggttttctacaaaatcttctctcaaacgccgctgctttt gcttcacatattctcttatttacaaaggaattagatgagttatgggcttaccaatcgtta attgaaaagttgatacaagttttacaatattgcactgtagctgagttggtgccgctcatg gaaatcccgggagttcgcatgacacgagctaagcagctattaagtagtggtttcaaaaca ctggctcacattgctacggctcaaccgggagcattatgtcaatccattgaccatctatct agaaaacaagcagctcaactgatagcatcagcaaagatattacttgaagagaaagttgaa tcccttcaagaagaagttgaagaccttaaagctgtaacaacataa

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