KEGG   Ciona intestinalis (yellow sea squirt): 100180713
Entry
100180713         CDS       T01056                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03018  RNA degradation
cin03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100180713
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100180713
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cin03019]
    100180713
   03041 Spliceosome [BR:cin03041]
    100180713
Messenger RNA biogenesis [BR:cin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100180713
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100180713
Spliceosome [BR:cin03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100180713
SSDB
Motif
Pfam: LSM SM-ATX LSM14
Other DBs
NCBI-GeneID: 100180713
NCBI-ProteinID: XP_002126895
Ensembl: ENSCING00000020625
UniProt: H2Y0C3
LinkDB
Position
12
AA seq 89 aa
MANAANPSQLLPLELVDKCIGSKIHIIMKSEKEIVGTLLGFDDFVNMVLEDVTEYESTSE
GRRISKLDQILLNGNNITMLVPGGEGPEM
NT seq 270 nt   +upstreamnt  +downstreamnt
atggcaaatgcagcaaatccttcccaactgttaccattggaattagttgacaagtgtatt
ggatctaaaattcatattattatgaaaagcgagaaggaaattgtgggcactcttcttgga
tttgatgattttgtaaacatggtacttgaagatgtaactgaatacgaatcaacttctgaa
ggcaggagaatttcgaaactggaccagatactacttaatggaaataacattacaatgctt
gtgcctgggggcgaaggccctgaaatgtga

DBGET integrated database retrieval system