Ciona intestinalis (yellow sea squirt): 100180961
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Entry
100180961 CDS
T01056
Name
(RefSeq) LOW QUALITY PROTEIN: cysteine--tRNA ligase, cytoplasmic-like
KO
K01883
cysteinyl-tRNA synthetase [EC:
6.1.1.16
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
100180961
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
cin01007
]
100180961
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cin03016
]
100180961
Enzymes [BR:
cin01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.16 cysteine---tRNA ligase
100180961
Amino acid related enzymes [BR:
cin01007
]
Aminoacyl-tRNA synthetase
Class I (G)
100180961
Transfer RNA biogenesis [BR:
cin03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
100180961
Prokaryotic type
100180961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1e
tRNA-synt_1c
Motif
Other DBs
NCBI-GeneID:
100180961
NCBI-ProteinID:
XP_026692167
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All DBs
Position
1:complement(2833861..2846568)
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AA seq
788 aa
AA seq
DB search
MQTDAAGDGAGKRNLRKQPEWEPPSHSNTHCLKLFNSLTRQKEVFIPENGNFVKWYSCGP
TVYDASHMGHARSYISFDILRRVLMDYFGYNVLYCMNITDIDDKIITRARHNYLVDEYLK
QSHSKEEIITDVSAALEEFSEKLSKTDDPDKKVMMERLLKQATLSVDKLKTTEMPGEAVI
ADVVNQAKDPVANWLDKKHGAGVTDNSIFSALPQYWEREYFEDMDALNVSPPDVLTRVSD
YVPEIVKYVEEIIKNGYGYKSNGSVYFSVSQFDSSDDHFYARLVPEAVGDLQALQEGEGS
LSSVADQLNEKRAPNDFALWKASKPGEPSWESPWGKVSYSCFYRCLIFEVLGCLLDYMSW
YRRLTWVCKVCLYTPKNQNIPGYQVLMHKRFKHFINLXQDALKKNSARQLRLAFLLHSWK
DTLDYSDNTMHDAVQFEKLMNEFFLTVKDVLRNQPNKGPEAFKKWNQDEMNLAKLFSERQ
QSVHAALCDNIDTRTALDNLRQLVTASNTYIALKHEQKSLPDGQLLKNIAKYITWIFKVF
GAIAQSDEIGFPLTVGGNTASNVEEILMPYLNTLSQFRENVRAIARTHKGNLLVKVFGAI
AQSDEIGFPLTVGGNTASNVEEILMPYLNTLSQFRENVRAIARSHKVSEVLELCDSLRDD
ILPALGVRLEDKEGLKTIVKLVDKDQLMKEREEKKKLEEKKAKEKEESRLAAARKKEEKE
AQRKIPPSQLFSKQTDKFSAFDDQGFPTHSVDGKELSKGQTKKLRKLYDAQTKLYQEYMQ
SVSTQNGS
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgcagactgatgcagcaggagacggcgcaggtaaacgtaacttacgtaagcaacccgaa
tgggaaccacccagccattcaaacacgcattgcttgaagctgtttaacagtttgactcgg
caaaaggaagtgtttatccccgaaaatggaaactttgtaaagtggtacagctgtggacca
actgtgtatgatgcatcacatatgggacacgcaaggtcttatatctcctttgatattcta
agaagagttttgatggattatttcggttacaatgtcctatactgtatgaatattacagat
attgacgataagataataacccgtgcaaggcataattacttggttgacgaatatttaaaa
caaagtcattctaaagaagaaataattacagatgtgtcagcagctttagaggaattttca
gaaaaattgtcaaaaactgatgatcctgacaagaaagtgatgatggaaagattgttaaag
caagctacattgtcagtggataagttaaaaactacagagatgcctggggaagctgtgatc
gcagatgtggtgaatcaggctaaagaccctgttgcaaactggctagataaaaaacatgga
gcaggtgtgacagacaactcaatattttcagctctacctcagtattgggagcgtgaatac
tttgaagatatggatgccttgaatgtttccccacccgatgtcttaacacgtgtgagcgat
tatgttcctgagattgtaaaatacgtcgaagaaattataaagaatggatacggttacaaa
tccaatggttctgtctacttctccgtgtctcagtttgattcctctgacgaccatttctac
gcgagacttgtccctgaagctgtaggagacctgcaagctctacaagaaggggaaggttca
ctcagcagtgtggctgatcaattgaatgaaaaacgtgcaccaaatgattttgctttgtgg
aaagcttcgaaaccaggggagccatcatgggaatcgccatggggcaaagtaagttacagt
tgtttttatagatgtctaatttttgaggtattagggtgtcttttggactatatgtcctgg
tataggcgtctaacatgggtatgcaaggtatgcttgtacaccccgaaaaatcagaatatc
cctggttaccaagtattaatgcataaacgattcaaacattttataaacttataacaggat
gcattgaaaaagaactcggctcggcagttaaggttggcgtttttacttcattcatggaaa
gatactttagattactctgacaacaccatgcatgacgctgtacagtttgaaaagcttatg
aatgagtttttcctaactgtaaaagatgttttacgaaaccaaccaaacaaaggaccagaa
gcgttcaagaaatggaaccaggatgaaatgaatctagctaagctgttttcagagaggcaa
caatcggttcatgctgcgttatgcgataacattgacactcgtacagctcttgacaacttg
cgtcaacttgtgactgcctcaaacacctatattgctttgaaacacgaacaaaagtcccta
ccggatggacagctgctgaaaaatatcgcaaaatatattacatggattttcaaggttttt
ggggcaatagcgcaatcagatgaaattggttttcctctcactgttggtggaaatactgct
tcgaatgttgaagaaattctcatgccgtatcttaatacattatcacagtttagggaaaat
gtacgcgccatagcaagaacacataaaggtaatttgctagtaaaggtttttggggcaata
gcgcaatcagatgaaattggttttcctctcactgttggtggaaatactgcttcgaatgtt
gaagaaattctcatgccgtatcttaatacattatcacagtttagggaaaatgtacgcgcc
atagcaagatcacataaagtgtccgaggtacttgagttatgcgactcactgcgagatgac
atcctccctgctctcggtgttcggttagaagataaagaaggattgaaaacaatcgttaaa
cttgtggataaggatcaactcatgaaagagagagaggaaaagaaaaagttagaagaaaag
aaggcaaaagaaaaagaagagagtaggttggctgctgcaagaaaaaaggaagagaaagaa
gctcaacggaaaattccaccatctcaactattttccaaacaaacagacaagttctctgcc
tttgatgaccagggttttcctacgcattctgttgacggtaaagagctcagcaaaggacaa
acaaagaaattacgaaaattatacgacgcacagacaaaactatatcaagaatatatgcaa
agtgtttcaactcaaaatgggagttaa
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