Ciona intestinalis (yellow sea squirt): 100181057
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Entry
100181057 CDS
T01056
Name
(RefSeq) small nuclear ribonucleoprotein Sm D3-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100181057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100181057
03041 Spliceosome [BR:
cin03041
]
100181057
03032 DNA replication proteins [BR:
cin03032
]
100181057
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
100181057
Spliceosome [BR:
cin03041
]
Complex A
U1 snRNP components
Sm proteins
100181057
U2 snRNP components
100181057
Complex B
U1 snRNP components
100181057
U4/U6.U5 tri-snRNP components
100181057
Complex C
U2 snRNP components
100181057
DNA replication proteins [BR:
cin03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
100181057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
100181057
NCBI-ProteinID:
XP_002126080
LinkDB
All DBs
Position
7:complement(832716..833616)
Genome browser
AA seq
130 aa
AA seq
DB search
MSIGVPIKVLHEAEGHVVTCESATGEVYRGKLIEAEDNMNSQMQDVTVTYRDGRTAQLQN
IYIRGSQVRFMILPDMLKNAPMLRHQKGGTAGRGKAAILKAQVRGRGRGAPRGGDRGGFR
GGYGDRGGRW
NT seq
393 nt
NT seq
+upstream
nt +downstream
nt
atgtctattggcgtaccgattaaagttttgcatgaagcagaaggccacgtggttacatgt
gagtctgccactggtgaagtttaccgaggaaaactgatcgaagccgaggacaatatgaac
agtcaaatgcaggatgtaacggtaacgtatcgcgacggaagaacggctcaactgcagaac
atatacatacgagggagccaagttcggtttatgatcttaccggacatgctcaaaaatgct
cctatgttacgtcaccaaaagggtggaacagccgggaggggaaaagcggcaattttaaag
gcgcaagtgcgcggcagaggaagaggcgctccaagaggaggcgatcgtggtggcttccgt
ggcggctatggtgatcgtggtggccgatggtag
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integrated database retrieval system
